RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ANKRD36CQ5JPF3 1778 aa7.45□□□□□ -1.22
CSDE1-202ENST00000339438 NSD2O96028 1365 aa7.44□□□□□ -1.22
CSDE1-202ENST00000339438 CFAP70Q5T0N1 1121 aa7.44□□□□□ -1.22
CSDE1-202ENST00000339438 FNBP4Q8N3X1 1017 aaPredicted RBP7.44□□□□□ -1.22
CSDE1-202ENST00000339438 SPATA31A3Q5VYP0 1347 aa7.43□□□□□ -1.22
CSDE1-202ENST00000339438 AATKQ6ZMQ8 1374 aa7.43□□□□□ -1.22
CSDE1-202ENST00000339438 NPC1L1Q9UHC9 1359 aa7.43□□□□□ -1.22
CSDE1-202ENST00000339438 SLC4A1APQ9BWU0 796 aaKnown RBP7.43□□□□□ -1.22
CSDE1-202ENST00000339438 MYH14Q7Z406 1995 aaKnown RBP7.42□□□□□ -1.22
CSDE1-202ENST00000339438 C19orf44Q9H6X5 657 aa7.42□□□□□ -1.22
CSDE1-202ENST00000339438 NUDCQ9Y266 331 aa7.42□□□□□ -1.22
CSDE1-202ENST00000339438 TCERG1O14776 1098 aaKnown RBP7.42□□□□□ -1.22
CSDE1-202ENST00000339438 VGFO15240 615 aaPredicted RBP7.42□□□□□ -1.22
CSDE1-202ENST00000339438 NINLQ9Y2I6 1382 aa7.41□□□□□ -1.22
CSDE1-202ENST00000339438 HSPA1LP34931 641 aa7.41□□□□□ -1.22
CSDE1-202ENST00000339438 PER1O15534 1290 aaPredicted RBP7.41□□□□□ -1.22
CSDE1-202ENST00000339438 MS4A1P11836 297 aa7.41□□□□□ -1.22
CSDE1-202ENST00000339438 PRDM4Q9UKN5 801 aa7.41□□□□□ -1.22
CSDE1-202ENST00000339438 EDC4Q6P2E9 1401 aaKnown RBP7.41□□□□□ -1.22
CSDE1-202ENST00000339438 AFDNP55196 1824 aaKnown RBP7.41□□□□□ -1.22
CSDE1-202ENST00000339438 LRRC37AA6NMS7 1700 aa7.41□□□□□ -1.22
CSDE1-202ENST00000339438 ANKRD31Q8N7Z5 1873 aa7.41□□□□□ -1.22
CSDE1-202ENST00000339438 KCPQ6ZWJ8 1503 aa7.4□□□□□ -1.22
CSDE1-202ENST00000339438 SLC26A8Q96RN1 970 aa7.4□□□□□ -1.22
CSDE1-202ENST00000339438 JCADQ9P266 1359 aa7.4□□□□□ -1.22
CSDE1-202ENST00000339438 RRP9O43818 475 aaKnown RBP7.4□□□□□ -1.22
CSDE1-202ENST00000339438 PPIP5K1Q6PFW1 1433 aa7.4□□□□□ -1.23
CSDE1-202ENST00000339438 A0A1W2PP64 1363 aa7.4□□□□□ -1.23
CSDE1-202ENST00000339438 SPATA31A6Q5VVP1 1343 aa7.39□□□□□ -1.23
CSDE1-202ENST00000339438 SLAIN2Q9P270 581 aa7.39□□□□□ -1.23
CSDE1-202ENST00000339438 CCDC7Q96M83 1385 aa7.39□□□□□ -1.23
CSDE1-202ENST00000339438 HSPA5P11021 654 aaKnown RBP7.39□□□□□ -1.23
CSDE1-202ENST00000339438 GLIPR1L2Q4G1C9 344 aa7.39□□□□□ -1.23
CSDE1-202ENST00000339438 NPM2Q86SE8 214 aaKnown RBP7.39□□□□□ -1.23
CSDE1-202ENST00000339438 FAM9BQ8IZU0 186 aa7.39□□□□□ -1.23
CSDE1-202ENST00000339438 SRCAPQ6ZRS2 3230 aa7.39□□□□□ -1.23
CSDE1-202ENST00000339438 MSH6P52701 1360 aa7.38□□□□□ -1.23
CSDE1-202ENST00000339438 ARFGEF1Q9Y6D6 1849 aa7.38□□□□□ -1.23
CSDE1-202ENST00000339438 FRAT2O75474 233 aaPredicted RBP7.38□□□□□ -1.23
CSDE1-202ENST00000339438 WAPLQ7Z5K2 1190 aa7.38□□□□□ -1.23
CSDE1-202ENST00000339438 ATAD2Q6PL18 1390 aa7.38□□□□□ -1.23
CSDE1-202ENST00000339438 TONSLQ96HA7 1378 aa7.38□□□□□ -1.23
CSDE1-202ENST00000339438 DDX60Q8IY21 1712 aaKnown RBP7.37□□□□□ -1.23
CSDE1-202ENST00000339438 ANKRD36BQ8N2N9 1353 aa7.37□□□□□ -1.23
CSDE1-202ENST00000339438 SOCS7O14512 581 aa7.37□□□□□ -1.23
CSDE1-202ENST00000339438 AAMPQ13685 434 aa7.37□□□□□ -1.23
CSDE1-202ENST00000339438 WASLO00401 505 aaPredicted RBP7.36□□□□□ -1.23
CSDE1-202ENST00000339438 MRS2Q9HD23 443 aa7.36□□□□□ -1.23
CSDE1-202ENST00000339438 COL11A2P13942 1736 aaPredicted RBP7.36□□□□□ -1.23
CSDE1-202ENST00000339438 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.36□□□□□ -1.231e-10■■□□□ 13.5
CSDE1-202ENST00000339438 CARD14Q9BXL6 1004 aa7.36□□□□□ -1.23
CSDE1-202ENST00000339438 CENPJQ9HC77 1338 aaPredicted RBP7.36□□□□□ -1.23
CSDE1-202ENST00000339438 PSME4Q14997 1843 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 CLCN1P35523 988 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 SLC4A3P48751 1232 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 SKAP1Q86WV1 359 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 EXOC6Q8TAG9 804 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 PAPPA2Q9BXP8 1791 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 KIF24Q5T7B8 1368 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 HSP90AA2PQ14568 343 aaPredicted RBP7.35□□□□□ -1.23
CSDE1-202ENST00000339438 RBM10P98175 930 aaKnown RBP7.35□□□□□ -1.23
CSDE1-202ENST00000339438 TMEM132EQ6IEE7 984 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 ORAI2Q96SN7 254 aa7.35□□□□□ -1.23
CSDE1-202ENST00000339438 KDRP35968 1356 aa7.34□□□□□ -1.23
CSDE1-202ENST00000339438 FGD1P98174 961 aa7.34□□□□□ -1.23
CSDE1-202ENST00000339438 TNS2Q63HR2 1409 aa7.34□□□□□ -1.24
CSDE1-202ENST00000339438 RRP1P56182 461 aaKnown RBP7.33□□□□□ -1.24
CSDE1-202ENST00000339438 BLMP54132 1417 aaPredicted RBP7.33□□□□□ -1.24
CSDE1-202ENST00000339438 MEGF6O75095 1541 aa7.33□□□□□ -1.24
CSDE1-202ENST00000339438 DDRGK1Q96HY6 314 aa7.33□□□□□ -1.24
CSDE1-202ENST00000339438 POGKQ9P215 609 aa7.33□□□□□ -1.24
CSDE1-202ENST00000339438 EIF3AQ14152 1382 aaKnown RBP7.33□□□□□ -1.24
CSDE1-202ENST00000339438 KDM2BQ8NHM5 1336 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 C8orf34Q49A92 452 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 FSD2A1L4K1 749 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 RTL1A6NKG5 1358 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 USP47Q96K76 1375 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 DICER1Q9UPY3 1922 aaKnown RBP7.32□□□□□ -1.24
CSDE1-202ENST00000339438 OVOS2A0A0G2JMS6 1433 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 SBF1O95248 1867 aa7.32□□□□□ -1.24
CSDE1-202ENST00000339438 PNISRQ8TF01 805 aaKnown RBP7.31□□□□□ -1.24
CSDE1-202ENST00000339438 KIF7Q2M1P5 1343 aa7.31□□□□□ -1.24
CSDE1-202ENST00000339438 POTEAQ6S8J7 498 aa7.31□□□□□ -1.24
CSDE1-202ENST00000339438 EID1Q9Y6B2 187 aa7.31□□□□□ -1.24
CSDE1-202ENST00000339438 PRAM1Q96QH2 718 aa7.31□□□□□ -1.24
CSDE1-202ENST00000339438 COL4A1P02462 1669 aa7.31□□□□□ -1.24
CSDE1-202ENST00000339438 CALD1Q05682 793 aaKnown RBP7.3□□□□□ -1.24
CSDE1-202ENST00000339438 ZNF326Q5BKZ1 582 aaKnown RBP7.3□□□□□ -1.24
CSDE1-202ENST00000339438 NUTM2DQ5VT03 806 aaPredicted RBP7.3□□□□□ -1.24
CSDE1-202ENST00000339438 CACNA1FO60840 1977 aa7.3□□□□□ -1.24
CSDE1-202ENST00000339438 ERBB4Q15303 1308 aa7.3□□□□□ -1.24
CSDE1-202ENST00000339438 XRCC6P12956 609 aaKnown RBP eCLIP7.3□□□□□ -1.24
CSDE1-202ENST00000339438 SENP3Q9H4L4 574 aaPredicted RBP7.3□□□□□ -1.24
CSDE1-202ENST00000339438 ADAMTSL1Q8N6G6 1762 aa7.29□□□□□ -1.24
CSDE1-202ENST00000339438 PARD3Q8TEW0 1356 aa7.29□□□□□ -1.24
CSDE1-202ENST00000339438 ARHGEF10O15013 1369 aa7.29□□□□□ -1.24
CSDE1-202ENST00000339438 HSP90AA1P07900 732 aaKnown RBP7.29□□□□□ -1.24
CSDE1-202ENST00000339438 CADPS2Q86UW7 1296 aa7.29□□□□□ -1.24
CSDE1-202ENST00000339438 DDX17Q92841 729 aaKnown RBP7.29□□□□□ -1.24
CSDE1-202ENST00000339438 EIF4G2P78344 907 aaKnown RBP eCLIP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms