RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 HSP90AB2PQ58FF8 381 aa19.75■□□□□ 0.75
CCDC88C-202ENST00000334448 IP6K1Q92551 441 aa19.75■□□□□ 0.75
CCDC88C-202ENST00000334448 RSPH6AQ9H0K4 717 aa19.75■□□□□ 0.75
CCDC88C-202ENST00000334448 CPDO75976 1380 aa19.74■□□□□ 0.75
CCDC88C-202ENST00000334448 KDRP35968 1356 aa19.74■□□□□ 0.75
CCDC88C-202ENST00000334448 AMPHP49418 695 aa19.74■□□□□ 0.75
CCDC88C-202ENST00000334448 CCDC27Q2M243 656 aa19.74■□□□□ 0.75
CCDC88C-202ENST00000334448 ROBO1Q9Y6N7 1651 aa19.74■□□□□ 0.75
CCDC88C-202ENST00000334448 CCDC146Q8IYE0 955 aa19.73■□□□□ 0.75
CCDC88C-202ENST00000334448 IGSF1Q8N6C5 1336 aa19.73■□□□□ 0.75
CCDC88C-202ENST00000334448 LTN1O94822 1766 aa19.72■□□□□ 0.75
CCDC88C-202ENST00000334448 APAF1O14727 1248 aa19.72■□□□□ 0.75
CCDC88C-202ENST00000334448 SOX12O15370 315 aa19.72■□□□□ 0.75
CCDC88C-202ENST00000334448 NCAPD2Q15021 1401 aa19.71■□□□□ 0.75
CCDC88C-202ENST00000334448 TCP11L2Q8N4U5 519 aa19.71■□□□□ 0.75
CCDC88C-202ENST00000334448 LMOD2Q6P5Q4 547 aa19.69■□□□□ 0.74
CCDC88C-202ENST00000334448 TOM1O60784 492 aa19.68■□□□□ 0.74
CCDC88C-202ENST00000334448 MAPK8IP3Q9UPT6 1336 aa19.68■□□□□ 0.74
CCDC88C-202ENST00000334448 COL22A1Q8NFW1 1626 aaPredicted RBP19.67■□□□□ 0.74
CCDC88C-202ENST00000334448 PRKAR2BP31323 418 aa19.67■□□□□ 0.74
CCDC88C-202ENST00000334448 CAMTA1Q9Y6Y1 1673 aa19.66■□□□□ 0.74
CCDC88C-202ENST00000334448 ABCA3Q99758 1704 aa19.66■□□□□ 0.74
CCDC88C-202ENST00000334448 COL18A1P39060 1754 aa19.65■□□□□ 0.74
CCDC88C-202ENST00000334448 TMPOP42166 694 aaKnown RBP19.65■□□□□ 0.74
CCDC88C-202ENST00000334448 LRRC59Q96AG4 307 aaKnown RBP19.65■□□□□ 0.74
CCDC88C-202ENST00000334448 WWC1Q8IX03 1113 aa19.64■□□□□ 0.73
CCDC88C-202ENST00000334448 EYA1Q99502 592 aa19.64■□□□□ 0.73
CCDC88C-202ENST00000334448 COL16A1Q07092 1604 aaPredicted RBP19.64■□□□□ 0.73
CCDC88C-202ENST00000334448 LMO7Q8WWI1 1683 aa19.64■□□□□ 0.73
CCDC88C-202ENST00000334448 PLEKHG2Q9H7P9 1386 aa19.63■□□□□ 0.73
CCDC88C-202ENST00000334448 NEFMP07197 916 aa19.63■□□□□ 0.73
CCDC88C-202ENST00000334448 GOLGA2Q08379 1002 aa19.63■□□□□ 0.73
CCDC88C-202ENST00000334448 SULT6B1Q6IMI4 303 aa19.63■□□□□ 0.73
CCDC88C-202ENST00000334448 WDR63Q8IWG1 891 aa19.63■□□□□ 0.73
CCDC88C-202ENST00000334448 TRMT2AQ8IZ69 625 aaKnown RBP19.63■□□□□ 0.73
CCDC88C-202ENST00000334448 HMOX1P09601 288 aa19.62■□□□□ 0.73
CCDC88C-202ENST00000334448 NFE2L2Q16236 605 aa19.62■□□□□ 0.73
CCDC88C-202ENST00000334448 AEBP1Q8IUX7 1158 aa19.62■□□□□ 0.73
CCDC88C-202ENST00000334448 KIAA0232Q92628 1395 aa19.61■□□□□ 0.73
CCDC88C-202ENST00000334448 ERBB3P21860 1342 aa19.6■□□□□ 0.73
CCDC88C-202ENST00000334448 E9PSI1 815 aa19.6■□□□□ 0.73
CCDC88C-202ENST00000334448 SLFN5Q08AF3 891 aa19.6■□□□□ 0.73
CCDC88C-202ENST00000334448 PHACTR3Q96KR7 559 aa19.6■□□□□ 0.73
CCDC88C-202ENST00000334448 SALL2Q9Y467 1007 aaPredicted RBP19.6■□□□□ 0.73
CCDC88C-202ENST00000334448 IL16Q14005 1332 aa19.59■□□□□ 0.73
CCDC88C-202ENST00000334448 CERKQ8TCT0 537 aa19.59■□□□□ 0.73
CCDC88C-202ENST00000334448 CABLES1Q8TDN4 633 aa19.59■□□□□ 0.73
CCDC88C-202ENST00000334448 TRIM35Q9UPQ4 493 aa19.59■□□□□ 0.73
CCDC88C-202ENST00000334448 FAM208AQ9UK61 1670 aaKnown RBP19.59■□□□□ 0.73
CCDC88C-202ENST00000334448 SENP3-EIF4A1A0A087X0R7 540 aa19.58■□□□□ 0.72
CCDC88C-202ENST00000334448 ZC3H6P61129 1189 aaKnown RBP19.58■□□□□ 0.72
CCDC88C-202ENST00000334448 ANKRD24Q8TF21 1146 aa19.58■□□□□ 0.72
CCDC88C-202ENST00000334448 CDCA7LQ96GN5 454 aa19.58■□□□□ 0.72
CCDC88C-202ENST00000334448 AXIN2Q9Y2T1 843 aa19.58■□□□□ 0.72
CCDC88C-202ENST00000334448 DUSP27Q5VZP5 1158 aa19.57■□□□□ 0.72
CCDC88C-202ENST00000334448 RRP7AQ9Y3A4 280 aaKnown RBP19.57■□□□□ 0.72
CCDC88C-202ENST00000334448 PHLPP1O60346 1717 aa19.56■□□□□ 0.72
CCDC88C-202ENST00000334448 UBAP1LF5GYI3 381 aa19.56■□□□□ 0.72
CCDC88C-202ENST00000334448 LMOD3Q0VAK6 560 aa19.56■□□□□ 0.72
CCDC88C-202ENST00000334448 RIPK4P57078 832 aa19.55■□□□□ 0.72
CCDC88C-202ENST00000334448 NBPF6Q5VWK0 638 aa19.55■□□□□ 0.72
CCDC88C-202ENST00000334448 NBPF4Q96M43 638 aa19.55■□□□□ 0.72
CCDC88C-202ENST00000334448 GAS2L2Q8NHY3 880 aa19.53■□□□□ 0.72
CCDC88C-202ENST00000334448 PRDM11Q9NQV5 511 aa19.53■□□□□ 0.72
CCDC88C-202ENST00000334448 RNF123Q5XPI4 1314 aa19.52■□□□□ 0.72
CCDC88C-202ENST00000334448 CALD1Q05682 793 aaKnown RBP19.52■□□□□ 0.72
CCDC88C-202ENST00000334448 NEUROD2Q15784 382 aa19.52■□□□□ 0.72
CCDC88C-202ENST00000334448 LTV1Q96GA3 475 aaPredicted RBP19.52■□□□□ 0.72
CCDC88C-202ENST00000334448 SPINK5Q9NQ38 1064 aaPredicted RBP19.52■□□□□ 0.72
CCDC88C-202ENST00000334448 COL5A2P05997 1499 aaPredicted RBP19.52■□□□□ 0.72
CCDC88C-202ENST00000334448 ZBTB7CA1YPR0 619 aa19.51■□□□□ 0.71
CCDC88C-202ENST00000334448 HTATSF1O43719 755 aaKnown RBP19.5■□□□□ 0.71
CCDC88C-202ENST00000334448 MYH16Q9H6N6 1097 aa19.5■□□□□ 0.71
CCDC88C-202ENST00000334448 CHRNA2Q15822 529 aa19.49■□□□□ 0.71
CCDC88C-202ENST00000334448 COL14A1Q05707 1796 aaKnown RBP19.49■□□□□ 0.71
CCDC88C-202ENST00000334448 WDR17Q8IZU2 1322 aa19.49■□□□□ 0.71
CCDC88C-202ENST00000334448 RGPD5Q99666 1765 aa19.48■□□□□ 0.71
CCDC88C-202ENST00000334448 PLEKHG5O94827 1062 aa19.48■□□□□ 0.71
CCDC88C-202ENST00000334448 HAP1P54257 671 aaPredicted RBP19.48■□□□□ 0.71
CCDC88C-202ENST00000334448 PIP4K2BP78356 416 aa19.48■□□□□ 0.71
CCDC88C-202ENST00000334448 MTHFSDQ2M296 383 aaKnown RBP19.48■□□□□ 0.71
CCDC88C-202ENST00000334448 LRRC37A3O60309 1634 aa19.47■□□□□ 0.71
CCDC88C-202ENST00000334448 ZNF853P0CG23 659 aa19.46■□□□□ 0.71
CCDC88C-202ENST00000334448 AMOTQ4VCS5 1084 aa19.46■□□□□ 0.71
CCDC88C-202ENST00000334448 USHBP1Q8N6Y0 703 aa19.46■□□□□ 0.71
CCDC88C-202ENST00000334448 IFT57Q9NWB7 429 aa19.46■□□□□ 0.71
CCDC88C-202ENST00000334448 RGPD2P0DJD1 1756 aa19.46■□□□□ 0.71
CCDC88C-202ENST00000334448 JCADQ9P266 1359 aa19.45■□□□□ 0.7
CCDC88C-202ENST00000334448 DLG5Q8TDM6 1919 aa19.45■□□□□ 0.7
CCDC88C-202ENST00000334448 FAM83GA6ND36 823 aa19.45■□□□□ 0.7
CCDC88C-202ENST00000334448 CT47B1P0C2W7 299 aaPredicted RBP19.45■□□□□ 0.7
CCDC88C-202ENST00000334448 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.45■□□□□ 0.7
CCDC88C-202ENST00000334448 RCAN3Q9UKA8 241 aa19.45■□□□□ 0.7
CCDC88C-202ENST00000334448 MAP3K5Q99683 1374 aa19.44■□□□□ 0.7
CCDC88C-202ENST00000334448 OVOS2A0A0G2JMS6 1433 aa19.44■□□□□ 0.7
CCDC88C-202ENST00000334448 FANCIQ9NVI1 1328 aa19.44■□□□□ 0.7
CCDC88C-202ENST00000334448 PLEKHO1Q53GL0 409 aaPredicted RBP19.43■□□□□ 0.7
CCDC88C-202ENST00000334448 CARD10Q9BWT7 1032 aa19.43■□□□□ 0.7
CCDC88C-202ENST00000334448 SUPT16HQ9Y5B9 1047 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-202ENST00000334448 CRB1P82279 1406 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms