RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SYNGAP1Q96PV0 1343 aa2.94□□□□□ -1.94
LINC00643-201ENST00000334389 ABCC11Q96J66 1382 aa2.94□□□□□ -1.94
LINC00643-201ENST00000334389 LAMB2P55268 1798 aa2.94□□□□□ -1.94
LINC00643-201ENST00000334389 RIC1Q4ADV7 1423 aa2.94□□□□□ -1.94
LINC00643-201ENST00000334389 MYCNP04198 464 aaPredicted RBP2.93□□□□□ -1.94
LINC00643-201ENST00000334389 FSTL1Q12841 308 aa2.93□□□□□ -1.94
LINC00643-201ENST00000334389 COL11A1P12107 1806 aaPredicted RBP2.93□□□□□ -1.94
LINC00643-201ENST00000334389 FER1L6Q2WGJ9 1857 aa2.93□□□□□ -1.94
LINC00643-201ENST00000334389 KANK1Q14678 1352 aa2.93□□□□□ -1.94
LINC00643-201ENST00000334389 PRR29P0C7W0 189 aa2.93□□□□□ -1.94
LINC00643-201ENST00000334389 SPAG9O60271 1321 aaKnown RBP2.93□□□□□ -1.94
LINC00643-201ENST00000334389 A0A1B0GUL6 1792 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 POLR3AO14802 1390 aaPredicted RBP2.92□□□□□ -1.94
LINC00643-201ENST00000334389 SGIP1Q9BQI5 828 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 SAGE1Q9NXZ1 904 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 ARAP2Q8WZ64 1704 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 TNS2Q63HR2 1409 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 KIAA0232Q92628 1395 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 PLSCR1O15162 318 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 NOM1Q5C9Z4 860 aaKnown RBP2.92□□□□□ -1.94
LINC00643-201ENST00000334389 GPR153Q6NV75 609 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 SLC16A10Q8TF71 515 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 MAST2Q6P0Q8 1798 aa2.92□□□□□ -1.94
LINC00643-201ENST00000334389 LRRC59Q96AG4 307 aaKnown RBP2.91□□□□□ -1.94
LINC00643-201ENST00000334389 KRTAP3-3Q9BYR6 98 aa2.91□□□□□ -1.94
LINC00643-201ENST00000334389 KRTAP3-2Q9BYR7 98 aa2.91□□□□□ -1.94
LINC00643-201ENST00000334389 CRB1P82279 1406 aa2.91□□□□□ -1.94
LINC00643-201ENST00000334389 SIPA1L3O60292 1781 aaPredicted RBP2.91□□□□□ -1.94
LINC00643-201ENST00000334389 KIF24Q5T7B8 1368 aa2.91□□□□□ -1.94
LINC00643-201ENST00000334389 CDCA7Q9BWT1 371 aaPredicted RBP2.91□□□□□ -1.94
LINC00643-201ENST00000334389 C19orf44Q9H6X5 657 aa2.91□□□□□ -1.94
LINC00643-201ENST00000334389 SLX4Q8IY92 1834 aa2.91□□□□□ -1.94
LINC00643-201ENST00000334389 USP19O94966 1318 aa2.9□□□□□ -1.94
LINC00643-201ENST00000334389 APLP1P51693 650 aa2.9□□□□□ -1.94
LINC00643-201ENST00000334389 NCKAP5LQ9HCH0 1330 aa2.9□□□□□ -1.95
LINC00643-201ENST00000334389 DOT1LQ8TEK3 1739 aa2.9□□□□□ -1.95
LINC00643-201ENST00000334389 GCC1Q96CN9 775 aa2.9□□□□□ -1.95
LINC00643-201ENST00000334389 ATP10DQ9P241 1426 aa2.9□□□□□ -1.95
LINC00643-201ENST00000334389 ECM29Q5VYK3 1845 aa2.89□□□□□ -1.95
LINC00643-201ENST00000334389 C1QTNF8P60827 252 aa2.89□□□□□ -1.95
LINC00643-201ENST00000334389 AMER1Q5JTC6 1135 aaPredicted RBP2.89□□□□□ -1.95
LINC00643-201ENST00000334389 ATF5Q9Y2D1 282 aaPredicted RBP2.89□□□□□ -1.95
LINC00643-201ENST00000334389 RBM46Q8TBY0 533 aaKnown RBP2.89□□□□□ -1.95
LINC00643-201ENST00000334389 LTN1O94822 1766 aa2.89□□□□□ -1.95
LINC00643-201ENST00000334389 COL3A1P02461 1466 aaPredicted RBP2.89□□□□□ -1.95
LINC00643-201ENST00000334389 MRC1P22897 1456 aa2.89□□□□□ -1.95
LINC00643-201ENST00000334389 CCNB3Q8WWL7 1395 aa2.89□□□□□ -1.95
LINC00643-201ENST00000334389 TJP1Q07157 1748 aa2.88□□□□□ -1.95
LINC00643-201ENST00000334389 CLEC11AQ9Y240 323 aa2.88□□□□□ -1.95
LINC00643-201ENST00000334389 PUS7Q96PZ0 661 aaKnown RBP2.87□□□□□ -1.95
LINC00643-201ENST00000334389 CAMKK2Q96RR4 588 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 ANKRD36CQ5JPF3 1778 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 SLAIN2Q9P270 581 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 KDM2AQ9Y2K7 1162 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 DDX60LQ5H9U9 1706 aaKnown RBP2.87□□□□□ -1.95
LINC00643-201ENST00000334389 A0A1W2PPC1 479 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 HRCP23327 699 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 HHIPL1Q96JK4 782 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 PPIP5K1Q6PFW1 1433 aa2.87□□□□□ -1.95
LINC00643-201ENST00000334389 USP31Q70CQ4 1352 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 SBNO2Q9Y2G9 1366 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 TIE1P35590 1138 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 EID1Q9Y6B2 187 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 KCNH6Q9H252 994 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 AFF2P51816 1311 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 MAP3K19Q56UN5 1328 aa2.86□□□□□ -1.95
LINC00643-201ENST00000334389 CFHR5Q9BXR6 569 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 SPATA31A5Q5VU36 1347 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 SPATA31A7Q8IWB4 1347 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 ZNF236Q9UL36 1845 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 ANKRD30AQ9BXX3 1397 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 UNC5CLQ8IV45 518 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 SPATA31A3Q5VYP0 1347 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 NPHP3Q7Z494 1330 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 CHADLQ6NUI6 762 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 BRINP3Q76B58 766 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 MYT1LQ9UL68 1186 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 PDZRN3Q9UPQ7 1066 aa2.85□□□□□ -1.95
LINC00643-201ENST00000334389 CCDC7Q96M83 1385 aa2.84□□□□□ -1.95
LINC00643-201ENST00000334389 COL4A6Q14031 1691 aa2.84□□□□□ -1.95
LINC00643-201ENST00000334389 ARID3CA6NKF2 412 aa2.84□□□□□ -1.95
LINC00643-201ENST00000334389 HSPA6P17066 643 aa2.84□□□□□ -1.95
LINC00643-201ENST00000334389 DNAJC5GQ8N7S2 189 aa2.84□□□□□ -1.96
LINC00643-201ENST00000334389 COL4A1P02462 1669 aa2.84□□□□□ -1.96
LINC00643-201ENST00000334389 RTL1A6NKG5 1358 aa2.84□□□□□ -1.96
LINC00643-201ENST00000334389 POTEFA5A3E0 1075 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 SLAIN1Q8ND83 568 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 NECTIN2Q92692 538 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 GJD4Q96KN9 370 aaPredicted RBP2.83□□□□□ -1.96
LINC00643-201ENST00000334389 KCNQ2O43526 872 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 GRIN3BO60391 1043 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 BAG6P46379 1132 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 HSPA2P54652 639 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 ERBB3P21860 1342 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 LTBP3Q9NS15 1303 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 USP6P35125 1406 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 COL1A1P02452 1464 aaPredicted RBP2.83□□□□□ -1.96
LINC00643-201ENST00000334389 SCN11AQ9UI33 1791 aa2.83□□□□□ -1.96
LINC00643-201ENST00000334389 IRX2Q9BZI1 471 aaPredicted RBP2.83□□□□□ -1.96
LINC00643-201ENST00000334389 LAPTM4AQ15012 233 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms