RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 FAM135BQ49AJ0 1406 aa8.29□□□□□ -1.08
ZNF540-201ENST00000316433 PTPRMP28827 1452 aa8.29□□□□□ -1.08
ZNF540-201ENST00000316433 YY1AP1Q9H869 796 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 PPP6R1Q9UPN7 881 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 RGPD1P0DJD0 1748 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 NPATQ14207 1427 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 PTMSP20962 102 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 CSPP1Q1MSJ5 1256 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 TMEM132AQ24JP5 1023 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 ZNF428Q96B54 188 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 KIF16BQ96L93 1317 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 PTMAP06454 111 aaKnown RBP8.28□□□□□ -1.08
ZNF540-201ENST00000316433 NBPF1Q3BBV0 1214 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 C3P01024 1663 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 USP19O94966 1318 aa8.28□□□□□ -1.08
ZNF540-201ENST00000316433 PATL2C9JE40 543 aaKnown RBP8.27□□□□□ -1.09
ZNF540-201ENST00000316433 ATP2B3Q16720 1220 aa8.27□□□□□ -1.09
ZNF540-201ENST00000316433 GEMIN8Q9NWZ8 242 aaKnown RBP8.27□□□□□ -1.09
ZNF540-201ENST00000316433 CPS1P31327 1500 aa8.27□□□□□ -1.09
ZNF540-201ENST00000316433 ZNF771Q7L3S4 317 aaPredicted RBP8.27□□□□□ -1.09
ZNF540-201ENST00000316433 SPAG9O60271 1321 aaKnown RBP8.27□□□□□ -1.09
ZNF540-201ENST00000316433 LRRC37A3O60309 1634 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 XPCQ01831 940 aaPredicted RBP8.26□□□□□ -1.09
ZNF540-201ENST00000316433 HS1BP3Q53T59 392 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 CRBNQ96SW2 442 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 C14orf93Q9H972 538 aaKnown RBP8.26□□□□□ -1.09
ZNF540-201ENST00000316433 CD163L1Q9NR16 1453 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 GRIPAP1Q4V328 841 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 GAS2L3Q86XJ1 694 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 PMFBP1Q8TBY8 1022 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 CHMP4CQ96CF2 233 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 KNSTRNQ9Y448 316 aa8.26□□□□□ -1.09
ZNF540-201ENST00000316433 DDX11L8A8MPP1 907 aa8.25□□□□□ -1.09
ZNF540-201ENST00000316433 TECPR2O15040 1411 aa8.25□□□□□ -1.09
ZNF540-201ENST00000316433 PTCH1Q13635 1447 aa8.25□□□□□ -1.09
ZNF540-201ENST00000316433 IBTKQ9P2D0 1353 aaPredicted RBP8.25□□□□□ -1.09
ZNF540-201ENST00000316433 NOL7Q9UMY1 257 aaKnown RBP8.25□□□□□ -1.09
ZNF540-201ENST00000316433 ADAMTS8Q9UP79 889 aa8.25□□□□□ -1.09
ZNF540-201ENST00000316433 LMTK3Q96Q04 1460 aa8.24□□□□□ -1.09
ZNF540-201ENST00000316433 TMED8Q6PL24 325 aaPredicted RBP8.24□□□□□ -1.09
ZNF540-201ENST00000316433 MYO5BQ9ULV0 1848 aa8.24□□□□□ -1.09
ZNF540-201ENST00000316433 NRXN3Q9Y4C0 1643 aa8.24□□□□□ -1.09
ZNF540-201ENST00000316433 TRIM6-TRIM34B2RNG4 842 aa8.24□□□□□ -1.09
ZNF540-201ENST00000316433 ZNF710Q8N1W2 664 aa8.24□□□□□ -1.09
ZNF540-201ENST00000316433 TRIM34Q9BYJ4 488 aa8.24□□□□□ -1.09
ZNF540-201ENST00000316433 CCDC66A2RUB6 948 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 IGSF3O75054 1194 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 CC2D1BQ5T0F9 858 aaKnown RBP8.23□□□□□ -1.09
ZNF540-201ENST00000316433 CLEC17AQ6ZS10 378 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 ZBTB9Q96C00 473 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 NASPP49321 788 aaPredicted RBP8.23□□□□□ -1.09
ZNF540-201ENST00000316433 HDAC1Q13547 482 aaPredicted RBP8.23□□□□□ -1.09
ZNF540-201ENST00000316433 TIGD1Q96MW7 591 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 MYRIPQ8NFW9 859 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 TSPYL1Q9H0U9 437 aa8.23□□□□□ -1.09
ZNF540-201ENST00000316433 TULP2O00295 520 aa8.22□□□□□ -1.09
ZNF540-201ENST00000316433 WDR43Q15061 677 aaKnown RBP eCLIP8.22□□□□□ -1.09
ZNF540-201ENST00000316433 CPSF1Q10570 1443 aaKnown RBP8.22□□□□□ -1.09
ZNF540-201ENST00000316433 DDIT3P35638 169 aa8.22□□□□□ -1.09
ZNF540-201ENST00000316433 ATAD2Q6PL18 1390 aa8.22□□□□□ -1.09
ZNF540-201ENST00000316433 CAPN2P17655 700 aa8.21□□□□□ -1.09
ZNF540-201ENST00000316433 RUNDC1Q96C34 613 aa8.21□□□□□ -1.09
ZNF540-201ENST00000316433 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.21□□□□□ -1.09
ZNF540-201ENST00000316433 SPDYE4A6NLX3 237 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 CHMP5Q9NZZ3 219 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 KIF3AQ9Y496 699 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 CACNA1FO60840 1977 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 ALKQ9UM73 1620 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 CRYBG1Q9Y4K1 1723 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 MCM5P33992 734 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 CLUAP1Q96AJ1 413 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 CDCA7LQ96GN5 454 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 CFAP44Q96MT7 982 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 TBC1D32Q96NH3 1257 aa8.21□□□□□ -1.1
ZNF540-201ENST00000316433 ZNF777Q9ULD5 760 aaPredicted RBP8.21□□□□□ -1.1
ZNF540-201ENST00000316433 AATKQ6ZMQ8 1374 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 PHRF1Q9P1Y6 1649 aaKnown RBP8.2□□□□□ -1.1
ZNF540-201ENST00000316433 NSD3Q9BZ95 1437 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 SENP3-EIF4A1A0A087X0R7 540 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 ZKSCAN5Q9Y2L8 839 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 GABPB1Q06547 395 aaPredicted RBP8.2□□□□□ -1.1
ZNF540-201ENST00000316433 SNX21Q969T3 373 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 CARD10Q9BWT7 1032 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 TBC1D2Q9BYX2 928 aa8.2□□□□□ -1.1
ZNF540-201ENST00000316433 CIZ1Q9ULV3 898 aaPredicted RBP8.2□□□□□ -1.1
ZNF540-201ENST00000316433 FMN2Q9NZ56 1722 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.19□□□□□ -1.1
ZNF540-201ENST00000316433 PRR29P0C7W0 189 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 SIRT1Q96EB6 747 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 EFCC1Q9HA90 598 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 DLG5Q8TDM6 1919 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 PHF14O94880 888 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 GTF2F1P35269 517 aaKnown RBP eCLIP8.19□□□□□ -1.1
ZNF540-201ENST00000316433 IL17RAQ96F46 866 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 POLR3GLQ9BT43 218 aa8.19□□□□□ -1.1
ZNF540-201ENST00000316433 YTHDC2Q9H6S0 1430 aaKnown RBP8.19□□□□□ -1.1
ZNF540-201ENST00000316433 LOC102724159A0A0B4J2E5 919 aa8.18□□□□□ -1.1
ZNF540-201ENST00000316433 PWP2Q15269 919 aaKnown RBP8.18□□□□□ -1.1
ZNF540-201ENST00000316433 ALDH1L2Q3SY69 923 aa8.18□□□□□ -1.1
ZNF540-201ENST00000316433 TICAM2Q86XR7 235 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms