RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 CETN2P41208 172 aa15.74■□□□□ 0.11
TRIM56-201ENST00000306085 TRAK1Q9UPV9 953 aa15.74■□□□□ 0.11
TRIM56-201ENST00000306085 NAP1L3Q99457 506 aaPredicted RBP15.74■□□□□ 0.11
TRIM56-201ENST00000306085 CASQ1P31415 396 aa15.73■□□□□ 0.11
TRIM56-201ENST00000306085 DNA2P51530 1060 aa15.73■□□□□ 0.11
TRIM56-201ENST00000306085 PANK3Q9H999 370 aa15.73■□□□□ 0.11
TRIM56-201ENST00000306085 ERC1Q8IUD2 1116 aa15.73■□□□□ 0.11
TRIM56-201ENST00000306085 MPHOSPH10O00566 681 aaKnown RBP15.73■□□□□ 0.11
TRIM56-201ENST00000306085 RAI14Q9P0K7 980 aa15.73■□□□□ 0.11
TRIM56-201ENST00000306085 FERP16591 822 aa15.73■□□□□ 0.11
TRIM56-201ENST00000306085 SRRTQ9BXP5 876 aaKnown RBP15.72■□□□□ 0.11
TRIM56-201ENST00000306085 API5Q9BZZ5 524 aaKnown RBP15.72■□□□□ 0.11
TRIM56-201ENST00000306085 APBB1IPQ7Z5R6 666 aaPredicted RBP15.72■□□□□ 0.11
TRIM56-201ENST00000306085 CALCOCO1Q9P1Z2 691 aa15.72■□□□□ 0.11
TRIM56-201ENST00000306085 RIPK4P57078 832 aa15.72■□□□□ 0.11
TRIM56-201ENST00000306085 UBTFL1P0CB47 393 aaPredicted RBP15.72■□□□□ 0.11
TRIM56-201ENST00000306085 TRIM22Q8IYM9 498 aa15.72■□□□□ 0.11
TRIM56-201ENST00000306085 FAM107BQ9H098 131 aa15.71■□□□□ 0.11
TRIM56-201ENST00000306085 C6orf163Q5TEZ5 329 aa15.71■□□□□ 0.11
TRIM56-201ENST00000306085 TSPYL4Q9UJ04 414 aa15.71■□□□□ 0.11
TRIM56-201ENST00000306085 ZBED9Q6R2W3 1325 aa15.71■□□□□ 0.1
TRIM56-201ENST00000306085 SPA17Q15506 151 aa15.71■□□□□ 0.1
TRIM56-201ENST00000306085 HOMER2Q9NSB8 354 aa15.71■□□□□ 0.1
TRIM56-201ENST00000306085 MNAT1P51948 309 aa15.7■□□□□ 0.1
TRIM56-201ENST00000306085 GBP3Q9H0R5 595 aa15.7■□□□□ 0.1
TRIM56-201ENST00000306085 CCDC69A6NI79 296 aa15.7■□□□□ 0.1
TRIM56-201ENST00000306085 IMMTQ16891 758 aaKnown RBP15.7■□□□□ 0.1
TRIM56-201ENST00000306085 FILIP1Q7Z7B0 1213 aa15.7■□□□□ 0.1
TRIM56-201ENST00000306085 PHF23Q9BUL5 403 aaPredicted RBP15.7■□□□□ 0.1
TRIM56-201ENST00000306085 MPHOSPH9Q99550 1183 aa15.7■□□□□ 0.1
TRIM56-201ENST00000306085 WDR70Q9NW82 654 aa15.7■□□□□ 0.1
TRIM56-201ENST00000306085 NUP133Q8WUM0 1156 aa15.69■□□□□ 0.1
TRIM56-201ENST00000306085 GIGYF2Q6Y7W6 1299 aaKnown RBP15.69■□□□□ 0.1
TRIM56-201ENST00000306085 PPP1R1BQ9UD71 204 aaPredicted RBP15.69■□□□□ 0.1
TRIM56-201ENST00000306085 FAM177BA6PVY3 158 aa15.69■□□□□ 0.1
TRIM56-201ENST00000306085 CEP57L1Q8IYX8 460 aa15.69■□□□□ 0.1
TRIM56-201ENST00000306085 MCM3P25205 808 aa15.69■□□□□ 0.1
TRIM56-201ENST00000306085 GRPEL1Q9HAV7 217 aa15.69■□□□□ 0.1
TRIM56-201ENST00000306085 ZHX1Q9UKY1 873 aaPredicted RBP15.69■□□□□ 0.1
TRIM56-201ENST00000306085 DCAF8L1A6NGE4 600 aa15.68■□□□□ 0.1
TRIM56-201ENST00000306085 TTC39AQ5SRH9 613 aa15.68■□□□□ 0.1
TRIM56-201ENST00000306085 PANK1Q8TE04 598 aa15.68■□□□□ 0.1
TRIM56-201ENST00000306085 CTR9Q6PD62 1173 aa15.68■□□□□ 0.1
TRIM56-201ENST00000306085 LARP1Q6PKG0 1096 aaKnown RBP15.68■□□□□ 0.1
TRIM56-201ENST00000306085 UPF3BQ9BZI7 483 aaKnown RBP15.68■□□□□ 0.1
TRIM56-201ENST00000306085 BMP2KQ9NSY1 1161 aaPredicted RBP15.68■□□□□ 0.1
TRIM56-201ENST00000306085 GTF2F1P35269 517 aaKnown RBP eCLIP15.68■□□□□ 0.15e-8■■■■□ 21.7
TRIM56-201ENST00000306085 CHMP4BP1P59074 171 aa15.68■□□□□ 0.1
TRIM56-201ENST00000306085 PPP1R12BO60237 982 aaPredicted RBP15.68■□□□□ 0.1
TRIM56-201ENST00000306085 CFAP100Q494V2 611 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 ZNF76P36508 570 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 SPECC1LQ69YQ0 1117 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 SPDYE4A6NLX3 237 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 APAF1O14727 1248 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 GTF2A1P52655 376 aaPredicted RBP15.67■□□□□ 0.1
TRIM56-201ENST00000306085 SPECC1Q5M775 1068 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 KIF5CO60282 957 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 CTNNA2P26232 953 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 PIBF1Q8WXW3 757 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 TMX1Q9H3N1 280 aa15.67■□□□□ 0.1
TRIM56-201ENST00000306085 PPP1R14CQ8TAE6 165 aa15.66■□□□□ 0.1
TRIM56-201ENST00000306085 PABPN1LA6NDY0 278 aaKnown RBP15.66■□□□□ 0.1
TRIM56-201ENST00000306085 MRPS9P82933 396 aaKnown RBP15.66■□□□□ 0.1
TRIM56-201ENST00000306085 DNAI2Q9GZS0 605 aa15.66■□□□□ 0.1
TRIM56-201ENST00000306085 HIP1O00291 1037 aa15.66■□□□□ 0.1
TRIM56-201ENST00000306085 CFAP58Q5T655 872 aa15.66■□□□□ 0.1
TRIM56-201ENST00000306085 KRT85P78386 507 aa15.66■□□□□ 0.1
TRIM56-201ENST00000306085 MCM2P49736 904 aa15.66■□□□□ 0.1
TRIM56-201ENST00000306085 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.66■□□□□ 0.1
TRIM56-201ENST00000306085 RBM5P52756 815 aaKnown RBP eCLIP15.66■□□□□ 0.1
TRIM56-201ENST00000306085 GON4LQ3T8J9 2241 aa15.65■□□□□ 0.1
TRIM56-201ENST00000306085 HLTFQ14527 1009 aaKnown RBP eCLIP15.65■□□□□ 0.12e-6■■■□□ 16.8
TRIM56-201ENST00000306085 SPATA32Q96LK8 384 aa15.65■□□□□ 0.1
TRIM56-201ENST00000306085 RAB3IL1Q8TBN0 382 aa15.65■□□□□ 0.1
TRIM56-201ENST00000306085 RAB3GAP2Q9H2M9 1393 aa15.65■□□□□ 0.1
TRIM56-201ENST00000306085 NOL7Q9UMY1 257 aaKnown RBP15.65■□□□□ 0.1
TRIM56-201ENST00000306085 ARL1P40616 181 aaPredicted RBP15.65■□□□□ 0.1
TRIM56-201ENST00000306085 MXRA7P84157 204 aa15.65■□□□□ 0.1
TRIM56-201ENST00000306085 FBF1Q8TES7 1133 aa15.65■□□□□ 0.1
TRIM56-201ENST00000306085 ATP2C2O75185 946 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 CYP46A1Q9Y6A2 500 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 DNAAF4Q8WXU2 420 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 EVC2Q86UK5 1308 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 FSD2A1L4K1 749 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 PSME1Q06323 249 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 TSNARE1Q96NA8 513 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 KIF6Q6ZMV9 814 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 MAATS1Q7Z4T9 603 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 VPS36Q86VN1 386 aa15.64■□□□□ 0.09
TRIM56-201ENST00000306085 PTPN14Q15678 1187 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 CCDC6Q16204 474 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 WASHC2AQ641Q2 1341 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 WASHC2CQ9Y4E1 1318 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 WDR66Q8TBY9 1149 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.63■□□□□ 0.09
TRIM56-201ENST00000306085 TAOK3Q9H2K8 898 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 GNL3LQ9NVN8 582 aaKnown RBP15.63■□□□□ 0.09
TRIM56-201ENST00000306085 SMTNL1A8MU46 457 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 CCDC57Q2TAC2 916 aa15.63■□□□□ 0.09
TRIM56-201ENST00000306085 SCLT1Q96NL6 688 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms