RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 FILIP1LQ4L180 1135 aa16.58■□□□□ 0.25
PRKCB-201ENST00000303531 ZNF530Q6P9A1 599 aaPredicted RBP16.58■□□□□ 0.24
PRKCB-201ENST00000303531 BRPF1P55201 1214 aaPredicted RBP16.58■□□□□ 0.24
PRKCB-201ENST00000303531 RTEL1-TNFRSF6BF6WH68 1400 aa16.57■□□□□ 0.24
PRKCB-201ENST00000303531 TNMDQ9H2S6 317 aa16.57■□□□□ 0.24
PRKCB-201ENST00000303531 SLFN5Q08AF3 891 aa16.57■□□□□ 0.24
PRKCB-201ENST00000303531 IKQ13123 557 aaPredicted RBP16.57■□□□□ 0.24
PRKCB-201ENST00000303531 SMARCE1Q969G3 411 aa16.57■□□□□ 0.24
PRKCB-201ENST00000303531 RRS1Q15050 365 aaKnown RBP16.57■□□□□ 0.24
PRKCB-201ENST00000303531 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.57■□□□□ 0.246e-7■■□□□ 14.3
PRKCB-201ENST00000303531 CCP110O43303 1012 aa16.57■□□□□ 0.24
PRKCB-201ENST00000303531 TXLNAP40222 546 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 HMGN5P82970 282 aaKnown RBP16.56■□□□□ 0.24
PRKCB-201ENST00000303531 SLC3A2P08195 630 aaKnown RBP16.56■□□□□ 0.24
PRKCB-201ENST00000303531 KRT85P78386 507 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 ODF2Q5BJF6 829 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 JMYQ8N9B5 988 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 TOP2BQ02880 1626 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 LARP1BQ659C4 914 aaKnown RBP16.56■□□□□ 0.24
PRKCB-201ENST00000303531 MPNDQ8N594 471 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 SRGAP3O43295 1099 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 ME1P48163 572 aa16.56■□□□□ 0.24
PRKCB-201ENST00000303531 MYL6BP14649 208 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 AACSQ86V21 672 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 MAGEC2Q9UBF1 373 aaPredicted RBP16.55■□□□□ 0.24
PRKCB-201ENST00000303531 CDK5RAP3Q96JB5 506 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 STRN4Q9NRL3 753 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 SLC52A1Q9NWF4 448 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 ERCC4Q92889 916 aaPredicted RBP16.55■□□□□ 0.24
PRKCB-201ENST00000303531 CABP4P57796 275 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 NSD3Q9BZ95 1437 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 FCHSD2O94868 740 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 SERPINC1P01008 464 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 PROSER2Q86WR7 435 aaPredicted RBP16.55■□□□□ 0.24
PRKCB-201ENST00000303531 TMEM57Q8N5G2 664 aa16.55■□□□□ 0.24
PRKCB-201ENST00000303531 NOM1Q5C9Z4 860 aaKnown RBP16.54■□□□□ 0.24
PRKCB-201ENST00000303531 RBM10P98175 930 aaKnown RBP16.54■□□□□ 0.24
PRKCB-201ENST00000303531 MCM4P33991 863 aa16.54■□□□□ 0.24
PRKCB-201ENST00000303531 IL1RAPL2Q9NP60 686 aa16.54■□□□□ 0.24
PRKCB-201ENST00000303531 CWC27Q6UX04 472 aaKnown RBP16.54■□□□□ 0.24
PRKCB-201ENST00000303531 ATAD2Q6PL18 1390 aa16.53■□□□□ 0.24
PRKCB-201ENST00000303531 TMPOP42166 694 aaKnown RBP16.53■□□□□ 0.24
PRKCB-201ENST00000303531 BLOC1S2Q6QNY1 142 aa16.53■□□□□ 0.24
PRKCB-201ENST00000303531 STK11IPQ8N1F8 1099 aa16.53■□□□□ 0.24
PRKCB-201ENST00000303531 PDRG1Q9NUG6 133 aa16.53■□□□□ 0.24
PRKCB-201ENST00000303531 CIZ1Q9ULV3 898 aaPredicted RBP16.53■□□□□ 0.24
PRKCB-201ENST00000303531 ZFYVE27Q5T4F4 411 aa16.53■□□□□ 0.24
PRKCB-201ENST00000303531 HSP90AB2PQ58FF8 381 aa16.53■□□□□ 0.24
PRKCB-201ENST00000303531 JAKMIP1Q96N16 626 aaKnown RBP16.52■□□□□ 0.24
PRKCB-201ENST00000303531 NFE2L2Q16236 605 aa16.52■□□□□ 0.24
PRKCB-201ENST00000303531 TRIM22Q8IYM9 498 aa16.52■□□□□ 0.24
PRKCB-201ENST00000303531 RPAP2Q8IXW5 612 aaPredicted RBP16.52■□□□□ 0.24
PRKCB-201ENST00000303531 GNL3LQ9NVN8 582 aaKnown RBP16.52■□□□□ 0.24
PRKCB-201ENST00000303531 PIP4K2AP48426 406 aaPredicted RBP16.52■□□□□ 0.23
PRKCB-201ENST00000303531 ANKRD30BQ9BXX2 1392 aa16.52■□□□□ 0.23
PRKCB-201ENST00000303531 NAIPQ13075 1403 aa16.52■□□□□ 0.23
PRKCB-201ENST00000303531 NESP48681 1621 aa16.51■□□□□ 0.23
PRKCB-201ENST00000303531 RPGRIP1LQ68CZ1 1315 aa16.51■□□□□ 0.23
PRKCB-201ENST00000303531 NACAP1Q9BZK3 213 aa16.51■□□□□ 0.23
PRKCB-201ENST00000303531 SPATA32Q96LK8 384 aa16.51■□□□□ 0.23
PRKCB-201ENST00000303531 CCDC69A6NI79 296 aa16.5■□□□□ 0.23
PRKCB-201ENST00000303531 FKBP4Q02790 459 aaKnown RBP eCLIP16.5■□□□□ 0.23
PRKCB-201ENST00000303531 SPG7Q9UQ90 795 aa16.5■□□□□ 0.23
PRKCB-201ENST00000303531 BTBD11A6QL63 1104 aa16.5■□□□□ 0.23
PRKCB-201ENST00000303531 CCAR1Q8IX12 1150 aaKnown RBP16.5■□□□□ 0.23
PRKCB-201ENST00000303531 CCDC57Q2TAC2 916 aa16.5■□□□□ 0.23
PRKCB-201ENST00000303531 DDX54Q8TDD1 881 aaKnown RBP16.5■□□□□ 0.23
PRKCB-201ENST00000303531 FBXO3Q9UK99 471 aa16.5■□□□□ 0.23
PRKCB-201ENST00000303531 ZSCAN31Q96LW9 406 aaPredicted RBP16.49■□□□□ 0.23
PRKCB-201ENST00000303531 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.49■□□□□ 0.237e-7■■■■■ 52.8
PRKCB-201ENST00000303531 KRT18P05783 430 aaKnown RBP16.49■□□□□ 0.23
PRKCB-201ENST00000303531 TOPBP1Q92547 1522 aa16.49■□□□□ 0.23
PRKCB-201ENST00000303531 THEMISQ8N1K5 641 aaPredicted RBP16.49■□□□□ 0.23
PRKCB-201ENST00000303531 CDK13Q14004 1512 aaKnown RBP16.49■□□□□ 0.23
PRKCB-201ENST00000303531 TOM1L2Q6ZVM7 507 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 KLHL34Q8N239 644 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 CWC15Q9P013 229 aaKnown RBP16.48■□□□□ 0.23
PRKCB-201ENST00000303531 NUP133Q8WUM0 1156 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 DACH1Q9UI36 760 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 EXOC6BQ9Y2D4 811 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 POLA1P09884 1462 aaPredicted RBP16.48■□□□□ 0.23
PRKCB-201ENST00000303531 MRC2Q9UBG0 1479 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 PPFIBP1Q86W92 1011 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 ZNHIT6Q9NWK9 470 aaKnown RBP16.48■□□□□ 0.23
PRKCB-201ENST00000303531 NUTM1Q86Y26 1132 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 THUMPD2Q9BTF0 503 aaKnown RBP16.48■□□□□ 0.23
PRKCB-201ENST00000303531 CCDC112Q8NEF3 446 aa16.48■□□□□ 0.23
PRKCB-201ENST00000303531 SKIDA1Q1XH10 827 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 C20orf194Q5TEA3 1177 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 ZSCAN25Q6NSZ9 544 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 DHX8Q14562 1220 aaKnown RBP16.47■□□□□ 0.23
PRKCB-201ENST00000303531 SLC26A8Q96RN1 970 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 NUP62CLQ9H1M0 184 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 MYO6Q9UM54 1294 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 CFAP45Q9UL16 551 aa16.47■□□□□ 0.23
PRKCB-201ENST00000303531 MIS18AQ9NYP9 233 aa16.46■□□□□ 0.23
PRKCB-201ENST00000303531 SNAPC4Q5SXM2 1469 aa16.46■□□□□ 0.23
PRKCB-201ENST00000303531 CASTP20810 708 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms