RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 NLRP13Q86W25 1043 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 ZRANB1Q9UGI0 708 aa12.88□□□□□ -0.35
HMGN1-201ENST00000288344 TRPC5Q9UL62 973 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-201ENST00000288344 KIAA0232Q92628 1395 aa12.87□□□□□ -0.35
HMGN1-201ENST00000288344 NRAPQ86VF7 1730 aa12.87□□□□□ -0.35
HMGN1-201ENST00000288344 CARD14Q9BXL6 1004 aa12.87□□□□□ -0.35
HMGN1-201ENST00000288344 COL18A1P39060 1754 aa12.86□□□□□ -0.35
HMGN1-201ENST00000288344 COL14A1Q05707 1796 aaKnown RBP12.86□□□□□ -0.35
HMGN1-201ENST00000288344 NLRP6P59044 892 aa12.86□□□□□ -0.35
HMGN1-201ENST00000288344 EIF4G2P78344 907 aaKnown RBP eCLIP12.86□□□□□ -0.351e-6■□□□□ 9.4
HMGN1-201ENST00000288344 VPS72Q15906 364 aa12.86□□□□□ -0.35
HMGN1-201ENST00000288344 GJD4Q96KN9 370 aaPredicted RBP12.86□□□□□ -0.35
HMGN1-201ENST00000288344 LMO7Q8WWI1 1683 aa12.85□□□□□ -0.35
HMGN1-201ENST00000288344 CAMTA1Q9Y6Y1 1673 aa12.85□□□□□ -0.35
HMGN1-201ENST00000288344 GLI3P10071 1580 aa12.85□□□□□ -0.35
HMGN1-201ENST00000288344 ANKRD36BQ8N2N9 1353 aa12.85□□□□□ -0.35
HMGN1-201ENST00000288344 PLCH1Q4KWH8 1693 aa12.85□□□□□ -0.35
HMGN1-201ENST00000288344 ZC3H6P61129 1189 aaKnown RBP12.85□□□□□ -0.35
HMGN1-201ENST00000288344 ARHGEF25Q86VW2 580 aa12.85□□□□□ -0.35
HMGN1-201ENST00000288344 EDC4Q6P2E9 1401 aaKnown RBP12.85□□□□□ -0.35
HMGN1-201ENST00000288344 MYOM1P52179 1685 aa12.84□□□□□ -0.35
HMGN1-201ENST00000288344 NME9Q86XW9 330 aa12.84□□□□□ -0.35
HMGN1-201ENST00000288344 TMC1Q8TDI8 760 aa12.84□□□□□ -0.35
HMGN1-201ENST00000288344 BTG4Q9NY30 223 aa12.84□□□□□ -0.35
HMGN1-201ENST00000288344 TERF2IPQ9NYB0 399 aa12.84□□□□□ -0.35
HMGN1-201ENST00000288344 NFAT5O94916 1531 aa12.83□□□□□ -0.36
HMGN1-201ENST00000288344 OVOS2A0A0J9YW53 1432 aa12.83□□□□□ -0.36
HMGN1-201ENST00000288344 RGS12O14924 1447 aa12.83□□□□□ -0.36
HMGN1-201ENST00000288344 OVOS2Q6IE36 1432 aa12.83□□□□□ -0.36
HMGN1-201ENST00000288344 CHRNA2Q15822 529 aa12.83□□□□□ -0.36
HMGN1-201ENST00000288344 AXIN2Q9Y2T1 843 aa12.83□□□□□ -0.36
HMGN1-201ENST00000288344 AATKQ6ZMQ8 1374 aa12.82□□□□□ -0.36
HMGN1-201ENST00000288344 FYB1O15117 783 aa12.82□□□□□ -0.36
HMGN1-201ENST00000288344 PLEKHG5O94827 1062 aa12.82□□□□□ -0.36
HMGN1-201ENST00000288344 CDCA8Q53HL2 280 aa12.82□□□□□ -0.36
HMGN1-201ENST00000288344 HDGFL2Q7Z4V5 671 aaPredicted RBP12.82□□□□□ -0.36
HMGN1-201ENST00000288344 PRDM11Q9NQV5 511 aa12.81□□□□□ -0.36
HMGN1-201ENST00000288344 SPATA31A5Q5VU36 1347 aa12.81□□□□□ -0.36
HMGN1-201ENST00000288344 SPATA31A7Q8IWB4 1347 aa12.81□□□□□ -0.36
HMGN1-201ENST00000288344 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.8□□□□□ -0.36
HMGN1-201ENST00000288344 HAP1P54257 671 aaPredicted RBP12.79□□□□□ -0.36
HMGN1-201ENST00000288344 KCNH5Q8NCM2 988 aa12.79□□□□□ -0.36
HMGN1-201ENST00000288344 SPATA31A1Q5TZJ5 1347 aa12.78□□□□□ -0.36
HMGN1-201ENST00000288344 LARP1Q6PKG0 1096 aaKnown RBP12.77□□□□□ -0.37
HMGN1-201ENST00000288344 COL5A2P05997 1499 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-201ENST00000288344 FBLN1P23142 703 aa12.76□□□□□ -0.37
HMGN1-201ENST00000288344 BRWD3Q6RI45 1802 aa12.75□□□□□ -0.37
HMGN1-201ENST00000288344 RGPD5Q99666 1765 aa12.75□□□□□ -0.37
HMGN1-201ENST00000288344 ABCC6O95255 1503 aa12.75□□□□□ -0.37
HMGN1-201ENST00000288344 KIF7Q2M1P5 1343 aa12.75□□□□□ -0.37
HMGN1-201ENST00000288344 PER1O15534 1290 aaPredicted RBP12.75□□□□□ -0.37
HMGN1-201ENST00000288344 BARGINQ6ZT62 677 aa12.75□□□□□ -0.37
HMGN1-201ENST00000288344 UPF1Q92900 1129 aaKnown RBP eCLIP12.75□□□□□ -0.37
HMGN1-201ENST00000288344 THSD7AQ9UPZ6 1657 aa12.75□□□□□ -0.37
HMGN1-201ENST00000288344 PRR29P0C7W0 189 aa12.74□□□□□ -0.37
HMGN1-201ENST00000288344 SEPT12Q8IYM1 358 aa12.74□□□□□ -0.37
HMGN1-201ENST00000288344 PIP4P2Q8N4L2 257 aa12.74□□□□□ -0.37
HMGN1-201ENST00000288344 GGNBP2Q9H3C7 697 aa12.73□□□□□ -0.37
HMGN1-201ENST00000288344 PANK3Q9H999 370 aa12.73□□□□□ -0.37
HMGN1-201ENST00000288344 FXR2P51116 673 aaKnown RBP eCLIP12.72□□□□□ -0.374e-20■□□□□ 8.5
HMGN1-201ENST00000288344 IP6K1Q92551 441 aa12.72□□□□□ -0.37
HMGN1-201ENST00000288344 NSD3Q9BZ95 1437 aa12.72□□□□□ -0.37
HMGN1-201ENST00000288344 MAP3K19Q56UN5 1328 aa12.71□□□□□ -0.37
HMGN1-201ENST00000288344 WASHC2AQ641Q2 1341 aa12.71□□□□□ -0.37
HMGN1-201ENST00000288344 WDR17Q8IZU2 1322 aa12.71□□□□□ -0.37
HMGN1-201ENST00000288344 FAM98CQ17RN3 349 aaKnown RBP12.71□□□□□ -0.37
HMGN1-201ENST00000288344 COG3Q96JB2 828 aa12.71□□□□□ -0.37
HMGN1-201ENST00000288344 THRAP3Q9Y2W1 955 aaKnown RBP12.71□□□□□ -0.37
HMGN1-201ENST00000288344 CRB1P82279 1406 aa12.71□□□□□ -0.38
HMGN1-201ENST00000288344 LTN1O94822 1766 aa12.7□□□□□ -0.38
HMGN1-201ENST00000288344 TCP11L2Q8N4U5 519 aa12.7□□□□□ -0.38
HMGN1-201ENST00000288344 CARD10Q9BWT7 1032 aa12.7□□□□□ -0.38
HMGN1-201ENST00000288344 STRN4Q9NRL3 753 aa12.7□□□□□ -0.38
HMGN1-201ENST00000288344 ERBB3P21860 1342 aa12.69□□□□□ -0.38
HMGN1-201ENST00000288344 SOX12O15370 315 aa12.69□□□□□ -0.38
HMGN1-201ENST00000288344 EVA1CP58658 441 aa12.69□□□□□ -0.38
HMGN1-201ENST00000288344 DISP2A7MBM2 1401 aa12.69□□□□□ -0.38
HMGN1-201ENST00000288344 CCDC7Q96M83 1385 aa12.69□□□□□ -0.38
HMGN1-201ENST00000288344 KIF20BQ96Q89 1820 aa12.69□□□□□ -0.38
HMGN1-201ENST00000288344 HOXC9P31274 260 aa12.68□□□□□ -0.38
HMGN1-201ENST00000288344 SPOCK2Q92563 424 aa12.68□□□□□ -0.38
HMGN1-201ENST00000288344 PEAK1Q9H792 1746 aa12.67□□□□□ -0.38
HMGN1-201ENST00000288344 BLMP54132 1417 aaPredicted RBP12.67□□□□□ -0.38
HMGN1-201ENST00000288344 KIF24Q5T7B8 1368 aa12.67□□□□□ -0.38
HMGN1-201ENST00000288344 RRS1Q15050 365 aaKnown RBP12.66□□□□□ -0.38
HMGN1-201ENST00000288344 KRT27Q7Z3Y8 459 aa12.66□□□□□ -0.38
HMGN1-201ENST00000288344 KLHL34Q8N239 644 aa12.66□□□□□ -0.38
HMGN1-201ENST00000288344 POLKQ9UBT6 870 aa12.66□□□□□ -0.38
HMGN1-201ENST00000288344 CCDC9Q9Y3X0 531 aaKnown RBP12.66□□□□□ -0.38
HMGN1-201ENST00000288344 SRCAPQ6ZRS2 3230 aa12.66□□□□□ -0.38
HMGN1-201ENST00000288344 PARP4Q9UKK3 1724 aaKnown RBP12.66□□□□□ -0.38
HMGN1-201ENST00000288344 CGNL1Q0VF96 1302 aa12.66□□□□□ -0.38
HMGN1-201ENST00000288344 ANKRD26Q9UPS8 1709 aa12.65□□□□□ -0.38
HMGN1-201ENST00000288344 MAP2P11137 1827 aaKnown RBP12.65□□□□□ -0.39
HMGN1-201ENST00000288344 HSP90AB2PQ58FF8 381 aa12.64□□□□□ -0.39
HMGN1-201ENST00000288344 ANKRD24Q8TF21 1146 aa12.64□□□□□ -0.39
HMGN1-201ENST00000288344 USP35Q9P2H5 1018 aa12.64□□□□□ -0.39
HMGN1-201ENST00000288344 RTL1A6NKG5 1358 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 INSRP06213 1382 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 TOM1L2Q6ZVM7 507 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms