RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 HOOK3Q86VS8 718 aa10.27□□□□□ -0.77
NIPBL-201ENST00000282516 DDX23Q9BUQ8 820 aaKnown RBP10.27□□□□□ -0.77
NIPBL-201ENST00000282516 KRT85P78386 507 aa10.26□□□□□ -0.77
NIPBL-201ENST00000282516 GNAI3P08754 354 aa10.26□□□□□ -0.77
NIPBL-201ENST00000282516 PSME1Q06323 249 aa10.26□□□□□ -0.77
NIPBL-201ENST00000282516 GIGYF2Q6Y7W6 1299 aaKnown RBP10.26□□□□□ -0.77
NIPBL-201ENST00000282516 LUZP1Q86V48 1076 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 CYP46A1Q9Y6A2 500 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 CCDC69A6NI79 296 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 SOGA3Q5TF21 947 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 DHX37Q8IY37 1157 aaKnown RBP10.25□□□□□ -0.77
NIPBL-201ENST00000282516 RAPGEF4Q8WZA2 1011 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 TTC39AQ5SRH9 613 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 PDIA4P13667 645 aaKnown RBP10.25□□□□□ -0.77
NIPBL-201ENST00000282516 IFFO1Q0D2I5 559 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 RBM10P98175 930 aaKnown RBP10.25□□□□□ -0.77
NIPBL-201ENST00000282516 ATP2B2Q01814 1243 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 PODXL2Q9NZ53 605 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 NEK4P51957 841 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 EIF5P55010 431 aaKnown RBP10.25□□□□□ -0.77
NIPBL-201ENST00000282516 SPA17Q15506 151 aa10.25□□□□□ -0.77
NIPBL-201ENST00000282516 DNAJC2Q99543 621 aaKnown RBP10.25□□□□□ -0.77
NIPBL-201ENST00000282516 PRPF40AO75400 957 aaKnown RBP10.24□□□□□ -0.77
NIPBL-201ENST00000282516 CEBPZQ03701 1054 aaKnown RBP10.24□□□□□ -0.77
NIPBL-201ENST00000282516 BCCIPQ9P287 314 aaKnown RBP eCLIP10.24□□□□□ -0.77
NIPBL-201ENST00000282516 SMARCA2P51531 1590 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 WASF1Q92558 559 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 GSTTP1A0A1W2PQM5 241 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 SMTNL1A8MU46 457 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 CCDC175P0C221 793 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 UBXN4Q92575 508 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 ST20-MTHFSA0A0A6YYL1 179 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 MPHOSPH10O00566 681 aaKnown RBP10.24□□□□□ -0.77
NIPBL-201ENST00000282516 FAM177A1Q8N128 213 aaPredicted RBP10.24□□□□□ -0.77
NIPBL-201ENST00000282516 CUX1P39880 1505 aa10.24□□□□□ -0.77
NIPBL-201ENST00000282516 KDM4AO75164 1064 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 APAF1O14727 1248 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 POLR3GO15318 223 aaPredicted RBP10.23□□□□□ -0.77
NIPBL-201ENST00000282516 C6orf163Q5TEZ5 329 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 TICAM2Q86XR7 235 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 MINK1Q8N4C8 1332 aaPredicted RBP10.23□□□□□ -0.77
NIPBL-201ENST00000282516 CCDC150Q8NCX0 1101 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 FERP16591 822 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 CCDC113Q9H0I3 377 aa10.23□□□□□ -0.77
NIPBL-201ENST00000282516 UPF3BQ9BZI7 483 aaKnown RBP10.22□□□□□ -0.77
NIPBL-201ENST00000282516 TAOK3Q9H2K8 898 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 SCAPERQ9BY12 1400 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 ZSCAN12O43309 604 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 PPM1FP49593 454 aaPredicted RBP10.22□□□□□ -0.77
NIPBL-201ENST00000282516 SPECC1LQ69YQ0 1117 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 PPP4R3AQ6IN85 833 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 POTEB2H3BUK9 544 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 CEP131Q9UPN4 1083 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 TNIP1Q15025 636 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 CCDC158Q5M9N0 1113 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 BBXQ8WY36 941 aaPredicted RBP10.22□□□□□ -0.77
NIPBL-201ENST00000282516 CALCOCO1Q9P1Z2 691 aa10.22□□□□□ -0.77
NIPBL-201ENST00000282516 SREK1Q8WXA9 508 aaKnown RBP10.22□□□□□ -0.77
NIPBL-201ENST00000282516 SSBP05455 408 aaKnown RBP eCLIP10.22□□□□□ -0.77
NIPBL-201ENST00000282516 SFPQP23246 707 aaKnown RBP eCLIP10.22□□□□□ -0.77
NIPBL-201ENST00000282516 CCDC30Q5VVM6 783 aa10.21□□□□□ -0.77
NIPBL-201ENST00000282516 ABCC8Q09428 1581 aa10.21□□□□□ -0.77
NIPBL-201ENST00000282516 PABPN1LA6NDY0 278 aaKnown RBP10.21□□□□□ -0.77
NIPBL-201ENST00000282516 KIF5CO60282 957 aa10.21□□□□□ -0.77
NIPBL-201ENST00000282516 AIMP1Q12904 312 aaKnown RBP10.21□□□□□ -0.77
NIPBL-201ENST00000282516 SPATA32Q96LK8 384 aa10.21□□□□□ -0.77
NIPBL-201ENST00000282516 CNTLNQ9NXG0 1405 aa10.21□□□□□ -0.78
NIPBL-201ENST00000282516 COMMD10Q9Y6G5 202 aa10.21□□□□□ -0.78
NIPBL-201ENST00000282516 ZSCAN25Q6NSZ9 544 aa10.21□□□□□ -0.78
NIPBL-201ENST00000282516 PRKRIP1Q9H875 184 aaPredicted RBP10.21□□□□□ -0.78
NIPBL-201ENST00000282516 UBE4AQ14139 1066 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 FGFR1OPO95684 399 aaKnown RBP10.2□□□□□ -0.78
NIPBL-201ENST00000282516 ZNF76P36508 570 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 ALS2CR12Q96Q35 445 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 UBAC1Q9BSL1 405 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 NUP62CLQ9H1M0 184 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 BRPF3Q9ULD4 1205 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 FKBP15Q5T1M5 1219 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 TSG101Q99816 390 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 GOPCQ9HD26 462 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 PANK1Q8TE04 598 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 DDX12PQ92771 950 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 TSNARE1Q96NA8 513 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 HOMER2Q9NSB8 354 aa10.2□□□□□ -0.78
NIPBL-201ENST00000282516 RNF187Q5TA31 235 aaPredicted RBP10.19□□□□□ -0.78
NIPBL-201ENST00000282516 ZWINTO95229 277 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 NLRP2Q9NX02 1062 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 SEPT6Q14141 434 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 CCDC83Q8IWF9 413 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 CNNM1Q9NRU3 951 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 SEC63Q9UGP8 760 aaKnown RBP10.19□□□□□ -0.78
NIPBL-201ENST00000282516 PPP6R1Q9UPN7 881 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 CASQ1P31415 396 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 PHAXQ9H814 394 aaKnown RBP10.19□□□□□ -0.78
NIPBL-201ENST00000282516 GRPEL1Q9HAV7 217 aa10.19□□□□□ -0.78
NIPBL-201ENST00000282516 SURF6O75683 361 aaKnown RBP10.19□□□□□ -0.78
NIPBL-201ENST00000282516 FERMT1Q9BQL6 677 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 SOGA1O94964 1423 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 CCDC178Q5BJE1 867 aa10.18□□□□□ -0.78
NIPBL-201ENST00000282516 CTNNA3Q9UI47 895 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 476.4 ms