RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 USP54Q70EL1 1684 aa18.17■□□□□ 0.5
CD44-203ENST00000278386 NFAT5O94916 1531 aa18.17■□□□□ 0.5
CD44-203ENST00000278386 TTC21AQ8NDW8 1320 aa18.17■□□□□ 0.5
CD44-203ENST00000278386 PARD3Q8TEW0 1356 aa18.17■□□□□ 0.5
CD44-203ENST00000278386 SBNO2Q9Y2G9 1366 aa18.17■□□□□ 0.5
CD44-203ENST00000278386 OVOS2A0A0G2JMS6 1433 aa18.16■□□□□ 0.5
CD44-203ENST00000278386 OVOS2A0A0J9YW53 1432 aa18.16■□□□□ 0.5
CD44-203ENST00000278386 OVOS2Q6IE36 1432 aa18.16■□□□□ 0.5
CD44-203ENST00000278386 TOM1L2Q6ZVM7 507 aa18.16■□□□□ 0.5
CD44-203ENST00000278386 RGPD3A6NKT7 1758 aaPredicted RBP18.15■□□□□ 0.5
CD44-203ENST00000278386 RGPD4Q7Z3J3 1758 aa18.15■□□□□ 0.5
CD44-203ENST00000278386 KCNH5Q8NCM2 988 aa18.15■□□□□ 0.5
CD44-203ENST00000278386 CAMKK2Q96RR4 588 aa18.14■□□□□ 0.49
CD44-203ENST00000278386 ABCC6O95255 1503 aa18.13■□□□□ 0.49
CD44-203ENST00000278386 WDR17Q8IZU2 1322 aa18.13■□□□□ 0.49
CD44-203ENST00000278386 CSB-PGBD3P0DP91 1061 aa18.12■□□□□ 0.49
CD44-203ENST00000278386 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.12■□□□□ 0.49
CD44-203ENST00000278386 DDB1Q16531 1140 aa18.11■□□□□ 0.49
CD44-203ENST00000278386 ARHGEF25Q86VW2 580 aa18.11■□□□□ 0.49
CD44-203ENST00000278386 TMC1Q8TDI8 760 aa18.11■□□□□ 0.49
CD44-203ENST00000278386 AXIN2Q9Y2T1 843 aa18.11■□□□□ 0.49
CD44-203ENST00000278386 CD163L1Q9NR16 1453 aa18.1■□□□□ 0.49
CD44-203ENST00000278386 C11orf95C9JLR9 678 aaPredicted RBP18.09■□□□□ 0.49
CD44-203ENST00000278386 HDGFL2Q7Z4V5 671 aaPredicted RBP18.08■□□□□ 0.48
CD44-203ENST00000278386 EDC4Q6P2E9 1401 aaKnown RBP18.06■□□□□ 0.48
CD44-203ENST00000278386 NBPF14Q5TI25 921 aa18.06■□□□□ 0.48
CD44-203ENST00000278386 NME9Q86XW9 330 aa18.06■□□□□ 0.48
CD44-203ENST00000278386 CDCA7Q9BWT1 371 aaPredicted RBP18.06■□□□□ 0.48
CD44-203ENST00000278386 CARD10Q9BWT7 1032 aa18.06■□□□□ 0.48
CD44-203ENST00000278386 A0A1W2PP64 1363 aa18.05■□□□□ 0.48
CD44-203ENST00000278386 USP31Q70CQ4 1352 aa18.05■□□□□ 0.48
CD44-203ENST00000278386 CCDC7Q96M83 1385 aa18.05■□□□□ 0.48
CD44-203ENST00000278386 TNS2Q63HR2 1409 aa18.05■□□□□ 0.48
CD44-203ENST00000278386 FAM208AQ9UK61 1670 aaKnown RBP18.04■□□□□ 0.48
CD44-203ENST00000278386 NHSQ6T4R5 1651 aa18.03■□□□□ 0.48
CD44-203ENST00000278386 SLC12A5Q9H2X9 1139 aa18.03■□□□□ 0.48
CD44-203ENST00000278386 TERF2IPQ9NYB0 399 aa18.03■□□□□ 0.48
CD44-203ENST00000278386 MARCH10Q8NA82 808 aaPredicted RBP18.02■□□□□ 0.48
CD44-203ENST00000278386 KAT6BQ8WYB5 2073 aa18.02■□□□□ 0.47
CD44-203ENST00000278386 ERBB3P21860 1342 aa18.01■□□□□ 0.47
CD44-203ENST00000278386 BCL11BQ9C0K0 894 aaPredicted RBP18■□□□□ 0.47
CD44-203ENST00000278386 NINLQ9Y2I6 1382 aa18■□□□□ 0.47
CD44-203ENST00000278386 CASZ1Q86V15 1759 aa17.99■□□□□ 0.47
CD44-203ENST00000278386 BCL9O00512 1426 aa17.99■□□□□ 0.47
CD44-203ENST00000278386 EXOC5O00471 708 aa17.99■□□□□ 0.47
CD44-203ENST00000278386 NLRP2Q9NX02 1062 aa17.99■□□□□ 0.47
CD44-203ENST00000278386 PTF1AQ7RTS3 328 aa17.98■□□□□ 0.47
CD44-203ENST00000278386 BTAF1O14981 1849 aa17.98■□□□□ 0.47
CD44-203ENST00000278386 KIF20BQ96Q89 1820 aa17.98■□□□□ 0.47
CD44-203ENST00000278386 ST20-MTHFSA0A0A6YYL1 179 aa17.97■□□□□ 0.47
CD44-203ENST00000278386 PLSCR1O15162 318 aa17.97■□□□□ 0.47
CD44-203ENST00000278386 ANKRD24Q8TF21 1146 aa17.97■□□□□ 0.47
CD44-203ENST00000278386 RGPD2P0DJD1 1756 aa17.96■□□□□ 0.47
CD44-203ENST00000278386 TRIM26Q12899 539 aaPredicted RBP17.96■□□□□ 0.47
CD44-203ENST00000278386 PUS7Q96PZ0 661 aaKnown RBP17.96■□□□□ 0.47
CD44-203ENST00000278386 TESK2Q96S53 571 aa17.96■□□□□ 0.47
CD44-203ENST00000278386 ANO8Q9HCE9 1232 aaPredicted RBP17.95■□□□□ 0.46
CD44-203ENST00000278386 PPP1R1BQ9UD71 204 aaPredicted RBP17.95■□□□□ 0.46
CD44-203ENST00000278386 IL2RBP14784 551 aa17.94■□□□□ 0.46
CD44-203ENST00000278386 USP47Q96K76 1375 aa17.93■□□□□ 0.46
CD44-203ENST00000278386 COG3Q96JB2 828 aa17.93■□□□□ 0.46
CD44-203ENST00000278386 SPON1Q9HCB6 807 aa17.93■□□□□ 0.46
CD44-203ENST00000278386 ANKRD36BQ8N2N9 1353 aa17.92■□□□□ 0.46
CD44-203ENST00000278386 SLC24A1O60721 1099 aa17.92■□□□□ 0.46
CD44-203ENST00000278386 ACSBG1Q96GR2 724 aa17.92■□□□□ 0.46
CD44-203ENST00000278386 DOT1LQ8TEK3 1739 aa17.92■□□□□ 0.46
CD44-203ENST00000278386 KCNQ2O43526 872 aa17.91■□□□□ 0.46
CD44-203ENST00000278386 LTV1Q96GA3 475 aaPredicted RBP17.91■□□□□ 0.46
CD44-203ENST00000278386 MYOM1P52179 1685 aa17.9■□□□□ 0.46
CD44-203ENST00000278386 SHANK3Q9BYB0 1731 aa17.9■□□□□ 0.46
CD44-203ENST00000278386 TMF1P82094 1093 aa17.89■□□□□ 0.45
CD44-203ENST00000278386 TXNRD1Q16881 649 aa17.89■□□□□ 0.45
CD44-203ENST00000278386 IP6K1Q92551 441 aa17.89■□□□□ 0.45
CD44-203ENST00000278386 STK32BQ9NY57 414 aa17.89■□□□□ 0.45
CD44-203ENST00000278386 PAPPAQ13219 1627 aa17.89■□□□□ 0.45
CD44-203ENST00000278386 AMPHP49418 695 aa17.88■□□□□ 0.45
CD44-203ENST00000278386 PROM2Q8N271 834 aa17.88■□□□□ 0.45
CD44-203ENST00000278386 MAP3K19Q56UN5 1328 aa17.88■□□□□ 0.45
CD44-203ENST00000278386 RTL1A6NKG5 1358 aa17.86■□□□□ 0.45
CD44-203ENST00000278386 ZBTB7AO95365 584 aa17.85■□□□□ 0.45
CD44-203ENST00000278386 HOXC9P31274 260 aa17.85■□□□□ 0.45
CD44-203ENST00000278386 SMG6Q86US8 1419 aaKnown RBP17.84■□□□□ 0.45
CD44-203ENST00000278386 FBLN1P23142 703 aa17.84■□□□□ 0.45
CD44-203ENST00000278386 SLC15A2Q16348 729 aa17.84■□□□□ 0.45
CD44-203ENST00000278386 DDX54Q8TDD1 881 aaKnown RBP17.84■□□□□ 0.45
CD44-203ENST00000278386 PDGFDQ9GZP0 370 aaPredicted RBP17.84■□□□□ 0.45
CD44-203ENST00000278386 GGNBP2Q9H3C7 697 aa17.83■□□□□ 0.44
CD44-203ENST00000278386 TUBGCP6Q96RT7 1819 aa17.83■□□□□ 0.44
CD44-203ENST00000278386 QSER1Q2KHR3 1735 aa17.83■□□□□ 0.44
CD44-203ENST00000278386 MEGF6O75095 1541 aa17.82■□□□□ 0.44
CD44-203ENST00000278386 RRS1Q15050 365 aaKnown RBP17.82■□□□□ 0.44
CD44-203ENST00000278386 CDCA8Q53HL2 280 aa17.82■□□□□ 0.44
CD44-203ENST00000278386 LY75O60449 1722 aa17.81■□□□□ 0.44
CD44-203ENST00000278386 DCAF8L1A6NGE4 600 aa17.81■□□□□ 0.44
CD44-203ENST00000278386 SYTL4Q96C24 671 aaPredicted RBP17.8■□□□□ 0.44
CD44-203ENST00000278386 ATF5Q9Y2D1 282 aaPredicted RBP17.8■□□□□ 0.44
CD44-203ENST00000278386 FYB1O15117 783 aa17.79■□□□□ 0.44
CD44-203ENST00000278386 NSD3Q9BZ95 1437 aa17.79■□□□□ 0.44
CD44-203ENST00000278386 ANKRD26Q9UPS8 1709 aa17.78■□□□□ 0.44
CD44-203ENST00000278386 USHBP1Q8N6Y0 703 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms