RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TXLNAP40222 546 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 ZNF428Q96B54 188 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 AK7Q96M32 723 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 RSPH6AQ9H0K4 717 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 WDR97A6NE52 1622 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 ADGRL1O94910 1474 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 HSP90AB2PQ58FF8 381 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 RUFY1Q96T51 708 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 IFT57Q9NWB7 429 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 CCDC39Q9UFE4 941 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 RBM5P52756 815 aaKnown RBP eCLIP10.4□□□□□ -0.74
PTCD3-201ENST00000254630 ATP2B2Q01814 1243 aa10.4□□□□□ -0.74
PTCD3-201ENST00000254630 CCDC57Q2TAC2 916 aa10.4□□□□□ -0.75
PTCD3-201ENST00000254630 SRCIN1Q9C0H9 1055 aa10.39□□□□□ -0.75
PTCD3-201ENST00000254630 CD109Q6YHK3 1445 aa10.39□□□□□ -0.75
PTCD3-201ENST00000254630 CT47B1P0C2W7 299 aaPredicted RBP10.39□□□□□ -0.75
PTCD3-201ENST00000254630 XPCQ01831 940 aaPredicted RBP10.39□□□□□ -0.75
PTCD3-201ENST00000254630 NACAP1Q9BZK3 213 aa10.39□□□□□ -0.75
PTCD3-201ENST00000254630 PATL2C9JE40 543 aaKnown RBP10.39□□□□□ -0.75
PTCD3-201ENST00000254630 KRT18P05783 430 aaKnown RBP10.39□□□□□ -0.75
PTCD3-201ENST00000254630 MCM2P49736 904 aa10.39□□□□□ -0.75
PTCD3-201ENST00000254630 CAGE1Q8TC20 777 aa10.39□□□□□ -0.75
PTCD3-201ENST00000254630 RABEP1Q15276 862 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 TEX35Q5T0J7 233 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 TSPY26PQ9H489 355 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 GNAT3A8MTJ3 354 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 BCAR3O75815 825 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 MPHOSPH8Q99549 860 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 FBXO3Q9UK99 471 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 SMC2O95347 1197 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.38□□□□□ -0.75
PTCD3-201ENST00000254630 ITSN2Q9NZM3 1697 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 PDE3AQ14432 1141 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 ANKRD1Q15327 319 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 AACSQ86V21 672 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 SLC26A8Q96RN1 970 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 STK3Q13188 491 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 MNS1Q8NEH6 495 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 CYP46A1Q9Y6A2 500 aa10.38□□□□□ -0.75
PTCD3-201ENST00000254630 HSP90AA2PQ14568 343 aaPredicted RBP10.37□□□□□ -0.75
PTCD3-201ENST00000254630 NBPF8Q3BBV2 869 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 ZNF771Q7L3S4 317 aaPredicted RBP10.37□□□□□ -0.75
PTCD3-201ENST00000254630 AEBP1Q8IUX7 1158 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 GRIN2AQ12879 1464 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 ZFYVE27Q5T4F4 411 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 AKNAQ7Z591 1439 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 SMARCE1Q969G3 411 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 SDF4Q9BRK5 362 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 NUDT16Q96DE0 195 aaKnown RBP10.37□□□□□ -0.75
PTCD3-201ENST00000254630 NEK4P51957 841 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 PRDM11Q9NQV5 511 aa10.37□□□□□ -0.75
PTCD3-201ENST00000254630 KINO60870 393 aaKnown RBP10.36□□□□□ -0.75
PTCD3-201ENST00000254630 ACBD3Q9H3P7 528 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 OFD1O75665 1012 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 FILIP1LQ4L180 1135 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 CDR1P51861 262 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 MVPQ14764 893 aaKnown RBP10.36□□□□□ -0.75
PTCD3-201ENST00000254630 KCNH5Q8NCM2 988 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 BIVM-ERCC5R4GMW8 1640 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 SPINK5Q9NQ38 1064 aaPredicted RBP10.36□□□□□ -0.75
PTCD3-201ENST00000254630 ATP2B1P20020 1258 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 STK38Q15208 465 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 BICDL1Q6ZP65 573 aa10.36□□□□□ -0.75
PTCD3-201ENST00000254630 ARGLU1Q9NWB6 273 aaPredicted RBP10.36□□□□□ -0.75
PTCD3-201ENST00000254630 FKBP4Q02790 459 aaKnown RBP eCLIP10.36□□□□□ -0.75
PTCD3-201ENST00000254630 CEBPZQ03701 1054 aaKnown RBP10.36□□□□□ -0.75
PTCD3-201ENST00000254630 CTTNBP2Q8WZ74 1663 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 PDCP20941 246 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 IGHMBP2P38935 993 aaKnown RBP10.35□□□□□ -0.75
PTCD3-201ENST00000254630 CCDC173Q0VFZ6 552 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 SYCP1Q15431 976 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 TTLL5Q6EMB2 1281 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 NUP133Q8WUM0 1156 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 UNC13AQ9UPW8 1703 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 NFE2L2Q16236 605 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 TRIM22Q8IYM9 498 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 NASPP49321 788 aaPredicted RBP10.35□□□□□ -0.75
PTCD3-201ENST00000254630 SOGA3Q5TF21 947 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 MYO6Q9UM54 1294 aa10.35□□□□□ -0.75
PTCD3-201ENST00000254630 CHD1LQ86WJ1 897 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.34□□□□□ -0.75
PTCD3-201ENST00000254630 CCP110O43303 1012 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 RDXP35241 583 aaKnown RBP10.34□□□□□ -0.75
PTCD3-201ENST00000254630 CAVIN1Q6NZI2 390 aaKnown RBP10.34□□□□□ -0.75
PTCD3-201ENST00000254630 PLB1Q6P1J6 1458 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 FCHSD2O94868 740 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 PIP4K2AP48426 406 aaPredicted RBP10.34□□□□□ -0.75
PTCD3-201ENST00000254630 ATF7IPQ6VMQ6 1270 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 DACH1Q9UI36 760 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 STARD3NLO95772 234 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 TDO2P48775 406 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 RAI14Q9P0K7 980 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 RAPGEF6Q8TEU7 1601 aa10.34□□□□□ -0.75
PTCD3-201ENST00000254630 TMOD3Q9NYL9 352 aa10.33□□□□□ -0.76
PTCD3-201ENST00000254630 NOL7Q9UMY1 257 aaKnown RBP10.33□□□□□ -0.76
PTCD3-201ENST00000254630 PRPF40AO75400 957 aaKnown RBP10.33□□□□□ -0.76
PTCD3-201ENST00000254630 NFKBIBQ15653 356 aa10.33□□□□□ -0.76
PTCD3-201ENST00000254630 PDRG1Q9NUG6 133 aa10.33□□□□□ -0.76
PTCD3-201ENST00000254630 BRPF1P55201 1214 aaPredicted RBP10.33□□□□□ -0.76
PTCD3-201ENST00000254630 MBD3O95983 291 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms