RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 EIF4G2P78344 907 aaKnown RBP eCLIP32.04■■■□□ 2.72
LSM4-201ENST00000252816 OVOS2A0A0J9YW53 1432 aa32.03■■■□□ 2.72
LSM4-201ENST00000252816 OVOS2Q6IE36 1432 aa32.03■■■□□ 2.72
LSM4-201ENST00000252816 BARGINQ6ZT62 677 aa32■■■□□ 2.71
LSM4-201ENST00000252816 TCP11L2Q8N4U5 519 aa32■■■□□ 2.71
LSM4-201ENST00000252816 CRB1P82279 1406 aa31.99■■■□□ 2.71
LSM4-201ENST00000252816 MYOM1P52179 1685 aa31.99■■■□□ 2.71
LSM4-201ENST00000252816 RGPD5Q99666 1765 aa31.96■■■□□ 2.71
LSM4-201ENST00000252816 WDR17Q8IZU2 1322 aa31.96■■■□□ 2.71
LSM4-201ENST00000252816 THRAP3Q9Y2W1 955 aaKnown RBP31.95■■■□□ 2.71
LSM4-201ENST00000252816 FAM182BQ5T319 152 aa31.94■■■□□ 2.7
LSM4-201ENST00000252816 TOM1L2Q6ZVM7 507 aa31.94■■■□□ 2.7
LSM4-201ENST00000252816 CCDC125Q86Z20 511 aa31.94■■■□□ 2.7
LSM4-201ENST00000252816 ABCC6O95255 1503 aa31.94■■■□□ 2.7
LSM4-201ENST00000252816 COG3Q96JB2 828 aa31.93■■■□□ 2.7
LSM4-201ENST00000252816 CARD14Q9BXL6 1004 aa31.93■■■□□ 2.7
LSM4-201ENST00000252816 FYB1O15117 783 aa31.92■■■□□ 2.7
LSM4-201ENST00000252816 BLMP54132 1417 aaPredicted RBP31.92■■■□□ 2.7
LSM4-201ENST00000252816 POLR3GLQ9BT43 218 aa31.91■■■□□ 2.7
LSM4-201ENST00000252816 LTN1O94822 1766 aa31.91■■■□□ 2.7
LSM4-201ENST00000252816 GGNBP2Q9H3C7 697 aa31.89■■■□□ 2.7
LSM4-201ENST00000252816 CSB-PGBD3P0DP91 1061 aa31.88■■■□□ 2.69
LSM4-201ENST00000252816 FBLN1P23142 703 aa31.88■■■□□ 2.69
LSM4-201ENST00000252816 NSD3Q9BZ95 1437 aa31.86■■■□□ 2.69
LSM4-201ENST00000252816 CARD10Q9BWT7 1032 aa31.85■■■□□ 2.69
LSM4-201ENST00000252816 ERBB3P21860 1342 aa31.84■■■□□ 2.69
LSM4-201ENST00000252816 C11orf95C9JLR9 678 aaPredicted RBP31.84■■■□□ 2.69
LSM4-201ENST00000252816 PDE3BQ13370 1112 aa31.83■■■□□ 2.69
LSM4-201ENST00000252816 PARP4Q9UKK3 1724 aaKnown RBP31.83■■■□□ 2.69
LSM4-201ENST00000252816 MAP3K19Q56UN5 1328 aa31.82■■■□□ 2.68
LSM4-201ENST00000252816 IP6K1Q92551 441 aa31.82■■■□□ 2.68
LSM4-201ENST00000252816 DEFB132Q7Z7B7 95 aa31.81■■■□□ 2.68
LSM4-201ENST00000252816 KIF20BQ96Q89 1820 aa31.8■■■□□ 2.68
LSM4-201ENST00000252816 ANKRD24Q8TF21 1146 aa31.8■■■□□ 2.68
LSM4-201ENST00000252816 SF3B2Q13435 895 aaKnown RBP31.79■■■□□ 2.68
LSM4-201ENST00000252816 FAM196AQ6ZSG2 479 aa31.78■■■□□ 2.68
LSM4-201ENST00000252816 DISP2A7MBM2 1401 aa31.77■■■□□ 2.68
LSM4-201ENST00000252816 RRS1Q15050 365 aaKnown RBP31.77■■■□□ 2.68
LSM4-201ENST00000252816 NLRP2Q9NX02 1062 aa31.77■■■□□ 2.68
LSM4-201ENST00000252816 CCDC7Q96M83 1385 aa31.77■■■□□ 2.68
LSM4-201ENST00000252816 WNK3Q9BYP7 1800 aa31.77■■■□□ 2.68
LSM4-201ENST00000252816 LRRC37A3O60309 1634 aa31.76■■■□□ 2.67
LSM4-201ENST00000252816 HOXC9P31274 260 aa31.75■■■□□ 2.67
LSM4-201ENST00000252816 AMPHP49418 695 aa31.75■■■□□ 2.67
LSM4-201ENST00000252816 DDB1Q16531 1140 aa31.75■■■□□ 2.67
LSM4-201ENST00000252816 CDCA7Q9BWT1 371 aaPredicted RBP31.74■■■□□ 2.67
LSM4-201ENST00000252816 LTV1Q96GA3 475 aaPredicted RBP31.73■■■□□ 2.67
LSM4-201ENST00000252816 PANK3Q9H999 370 aa31.73■■■□□ 2.67
LSM4-201ENST00000252816 TRIM37O94972 964 aa31.72■■■□□ 2.67
LSM4-201ENST00000252816 CGNL1Q0VF96 1302 aa31.72■■■□□ 2.67
LSM4-201ENST00000252816 RGPD1P0DJD0 1748 aa31.71■■■□□ 2.67
LSM4-201ENST00000252816 RTL1A6NKG5 1358 aa31.69■■■□□ 2.66
LSM4-201ENST00000252816 BAG6P46379 1132 aa31.69■■■□□ 2.66
LSM4-201ENST00000252816 TNS1Q9HBL0 1735 aaKnown RBP31.68■■■□□ 2.66
LSM4-201ENST00000252816 KIF7Q2M1P5 1343 aa31.68■■■□□ 2.66
LSM4-201ENST00000252816 MARCH10Q8NA82 808 aaPredicted RBP31.67■■■□□ 2.66
LSM4-201ENST00000252816 PEAK1Q9H792 1746 aa31.66■■■□□ 2.66
LSM4-201ENST00000252816 OVOS2A0A0G2JMS6 1433 aa31.66■■■□□ 2.66
LSM4-201ENST00000252816 EN1Q05925 392 aaPredicted RBP31.65■■■□□ 2.66
LSM4-201ENST00000252816 EXOC5O00471 708 aa31.64■■■□□ 2.66
LSM4-201ENST00000252816 IL2RBP14784 551 aa31.63■■■□□ 2.65
LSM4-201ENST00000252816 FAM208AQ9UK61 1670 aaKnown RBP31.63■■■□□ 2.65
LSM4-201ENST00000252816 HSP90AB2PQ58FF8 381 aa31.62■■■□□ 2.65
LSM4-201ENST00000252816 TNS2Q63HR2 1409 aa31.62■■■□□ 2.65
LSM4-201ENST00000252816 EMILIN1Q9Y6C2 1016 aa31.62■■■□□ 2.65
LSM4-201ENST00000252816 FLT4P35916 1363 aa31.6■■■□□ 2.65
LSM4-201ENST00000252816 KIF24Q5T7B8 1368 aa31.6■■■□□ 2.65
LSM4-201ENST00000252816 INSRP06213 1382 aa31.59■■■□□ 2.65
LSM4-201ENST00000252816 APBA3O96018 575 aa31.59■■■□□ 2.65
LSM4-201ENST00000252816 RGPD2P0DJD1 1756 aa31.58■■■□□ 2.65
LSM4-201ENST00000252816 BCL9O00512 1426 aa31.57■■■□□ 2.64
LSM4-201ENST00000252816 ANKRD26Q9UPS8 1709 aa31.56■■■□□ 2.64
LSM4-201ENST00000252816 EZH2Q15910 746 aaKnown RBP31.56■■■□□ 2.64
LSM4-201ENST00000252816 NBPF6Q5VWK0 638 aa31.56■■■□□ 2.64
LSM4-201ENST00000252816 NBPF4Q96M43 638 aa31.56■■■□□ 2.64
LSM4-201ENST00000252816 CAMKK2Q96RR4 588 aa31.56■■■□□ 2.64
LSM4-201ENST00000252816 SBF2Q86WG5 1849 aa31.54■■■□□ 2.64
LSM4-201ENST00000252816 PPM1GO15355 546 aaPredicted RBP31.54■■■□□ 2.64
LSM4-201ENST00000252816 TNNT2P45379 298 aaPredicted RBP31.54■■■□□ 2.64
LSM4-201ENST00000252816 PTF1AQ7RTS3 328 aa31.54■■■□□ 2.64
LSM4-201ENST00000252816 POLKQ9UBT6 870 aa31.54■■■□□ 2.64
LSM4-201ENST00000252816 SMG6Q86US8 1419 aaKnown RBP31.53■■■□□ 2.64
LSM4-201ENST00000252816 USHBP1Q8N6Y0 703 aa31.52■■■□□ 2.64
LSM4-201ENST00000252816 NSD2O96028 1365 aa31.52■■■□□ 2.64
LSM4-201ENST00000252816 KNSTRNQ9Y448 316 aa31.51■■■□□ 2.63
LSM4-201ENST00000252816 MAP2P11137 1827 aaKnown RBP31.51■■■□□ 2.63
LSM4-201ENST00000252816 MEGF6O75095 1541 aa31.49■■■□□ 2.63
LSM4-201ENST00000252816 BCL11BQ9C0K0 894 aaPredicted RBP31.49■■■□□ 2.63
LSM4-201ENST00000252816 WASHC2AQ641Q2 1341 aa31.49■■■□□ 2.63
LSM4-201ENST00000252816 PARD3Q8TEW0 1356 aa31.47■■■□□ 2.63
LSM4-201ENST00000252816 AMER1Q5JTC6 1135 aaPredicted RBP31.47■■■□□ 2.63
LSM4-201ENST00000252816 MORC1Q86VD1 984 aa31.45■■■□□ 2.63
LSM4-201ENST00000252816 SRCAPQ6ZRS2 3230 aa31.45■■■□□ 2.62
LSM4-201ENST00000252816 PER1O15534 1290 aaPredicted RBP31.44■■■□□ 2.62
LSM4-201ENST00000252816 KCNQ2O43526 872 aa31.44■■■□□ 2.62
LSM4-201ENST00000252816 DDX54Q8TDD1 881 aaKnown RBP31.44■■■□□ 2.62
LSM4-201ENST00000252816 ZCRB1Q8TBF4 217 aaKnown RBP31.42■■■□□ 2.62
LSM4-201ENST00000252816 ACSBG1Q96GR2 724 aa31.42■■■□□ 2.62
LSM4-201ENST00000252816 RREB1Q92766 1687 aa31.41■■■□□ 2.62
LSM4-201ENST00000252816 PLSCR1O15162 318 aa31.4■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms