RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 SOS2Q07890 1332 aaPredicted RBP17.08■□□□□ 0.33
HIF3A-201ENST00000244302 SULT6B1Q6IMI4 303 aa17.08■□□□□ 0.33
HIF3A-201ENST00000244302 SBNO1A3KN83 1393 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 MED1Q15648 1581 aaPredicted RBP17.07■□□□□ 0.32
HIF3A-201ENST00000244302 CHRNA2Q15822 529 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 ARHGEF25Q86VW2 580 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 USHBP1Q8N6Y0 703 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 EYA1Q99502 592 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 USP19O94966 1318 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 NFAT5O94916 1531 aa17.07■□□□□ 0.32
HIF3A-201ENST00000244302 FLT4P35916 1363 aa17.06■□□□□ 0.32
HIF3A-201ENST00000244302 TNS3Q68CZ2 1445 aa17.06■□□□□ 0.32
HIF3A-201ENST00000244302 KCNH5Q8NCM2 988 aa17.05■□□□□ 0.32
HIF3A-201ENST00000244302 LRRC59Q96AG4 307 aaKnown RBP17.05■□□□□ 0.32
HIF3A-201ENST00000244302 ZNF521Q96K83 1311 aa17.05■□□□□ 0.32
HIF3A-201ENST00000244302 ALS2Q96Q42 1657 aa17.05■□□□□ 0.32
HIF3A-201ENST00000244302 IP6K1Q92551 441 aa17.05■□□□□ 0.32
HIF3A-201ENST00000244302 FCHSD2O94868 740 aa17.04■□□□□ 0.32
HIF3A-201ENST00000244302 WWC1Q8IX03 1113 aa17.03■□□□□ 0.32
HIF3A-201ENST00000244302 TMPOP42166 694 aaKnown RBP17.03■□□□□ 0.32
HIF3A-201ENST00000244302 NBPF6Q5VWK0 638 aa17.02■□□□□ 0.32
HIF3A-201ENST00000244302 NBPF4Q96M43 638 aa17.02■□□□□ 0.32
HIF3A-201ENST00000244302 USP54Q70EL1 1684 aa17.02■□□□□ 0.31
HIF3A-201ENST00000244302 TRIM35Q9UPQ4 493 aa17.02■□□□□ 0.31
HIF3A-201ENST00000244302 SLIT3O75094 1523 aa17.02■□□□□ 0.31
HIF3A-201ENST00000244302 UBAP1LF5GYI3 381 aa17.01■□□□□ 0.31
HIF3A-201ENST00000244302 THUMPD2Q9BTF0 503 aaKnown RBP17.01■□□□□ 0.31
HIF3A-201ENST00000244302 IQSEC2Q5JU85 1478 aa17.01■□□□□ 0.31
HIF3A-201ENST00000244302 RIPK4P57078 832 aa17■□□□□ 0.31
HIF3A-201ENST00000244302 ROBO1Q9Y6N7 1651 aa17■□□□□ 0.31
HIF3A-201ENST00000244302 LTN1O94822 1766 aa17■□□□□ 0.31
HIF3A-201ENST00000244302 MAPK8IP3Q9UPT6 1336 aa17■□□□□ 0.31
HIF3A-201ENST00000244302 FAM83GA6ND36 823 aa16.99■□□□□ 0.31
HIF3A-201ENST00000244302 KIAA0232Q92628 1395 aa16.99■□□□□ 0.31
HIF3A-201ENST00000244302 IRX6P78412 446 aaPredicted RBP16.98■□□□□ 0.31
HIF3A-201ENST00000244302 GOLGA2Q08379 1002 aa16.98■□□□□ 0.31
HIF3A-201ENST00000244302 DCTN1Q14203 1278 aa16.98■□□□□ 0.31
HIF3A-201ENST00000244302 ANKRD24Q8TF21 1146 aa16.98■□□□□ 0.31
HIF3A-201ENST00000244302 PHF23Q9BUL5 403 aaPredicted RBP16.98■□□□□ 0.31
HIF3A-201ENST00000244302 IGSF1Q8N6C5 1336 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 TSHZ2Q9NRE2 1034 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 ARHGEF10O15013 1369 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 TOM1O60784 492 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 SLFN5Q08AF3 891 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 FKBP8Q14318 412 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 DUSP27Q5VZP5 1158 aa16.97■□□□□ 0.31
HIF3A-201ENST00000244302 NEFLP07196 543 aa16.96■□□□□ 0.3
HIF3A-201ENST00000244302 HAP1P54257 671 aaPredicted RBP16.95■□□□□ 0.3
HIF3A-201ENST00000244302 NHSL1Q5SYE7 1610 aa16.95■□□□□ 0.3
HIF3A-201ENST00000244302 NFE2L2Q16236 605 aa16.94■□□□□ 0.3
HIF3A-201ENST00000244302 MTHFSDQ2M296 383 aaKnown RBP16.94■□□□□ 0.3
HIF3A-201ENST00000244302 CERKQ8TCT0 537 aa16.94■□□□□ 0.3
HIF3A-201ENST00000244302 RGPD5Q99666 1765 aa16.94■□□□□ 0.3
HIF3A-201ENST00000244302 RGPD1P0DJD0 1748 aa16.94■□□□□ 0.3
HIF3A-201ENST00000244302 RGPD2P0DJD1 1756 aa16.93■□□□□ 0.3
HIF3A-201ENST00000244302 PDE3BQ13370 1112 aa16.93■□□□□ 0.3
HIF3A-201ENST00000244302 PRDM11Q9NQV5 511 aa16.93■□□□□ 0.3
HIF3A-201ENST00000244302 RTL1A6NKG5 1358 aa16.93■□□□□ 0.3
HIF3A-201ENST00000244302 KIF24Q5T7B8 1368 aa16.93■□□□□ 0.3
HIF3A-201ENST00000244302 PHRF1Q9P1Y6 1649 aaKnown RBP16.93■□□□□ 0.3
HIF3A-201ENST00000244302 TRMT2AQ8IZ69 625 aaKnown RBP16.93■□□□□ 0.3
HIF3A-201ENST00000244302 TSR2Q969E8 191 aaKnown RBP16.93■□□□□ 0.3
HIF3A-201ENST00000244302 ERBB3P21860 1342 aa16.92■□□□□ 0.3
HIF3A-201ENST00000244302 CRYBG1Q9Y4K1 1723 aa16.91■□□□□ 0.3
HIF3A-201ENST00000244302 MCM10Q7L590 875 aa16.91■□□□□ 0.3
HIF3A-201ENST00000244302 PNNQ9H307 717 aaKnown RBP16.91■□□□□ 0.3
HIF3A-201ENST00000244302 KDRP35968 1356 aa16.91■□□□□ 0.3
HIF3A-201ENST00000244302 CCDC27Q2M243 656 aa16.91■□□□□ 0.3
HIF3A-201ENST00000244302 NLRP2Q9NX02 1062 aa16.91■□□□□ 0.3
HIF3A-201ENST00000244302 LAS1LQ9Y4W2 734 aaKnown RBP16.9■□□□□ 0.3
HIF3A-201ENST00000244302 NEFMP07197 916 aa16.9■□□□□ 0.3
HIF3A-201ENST00000244302 NUTM2BA6NNL0 878 aaPredicted RBP16.89■□□□□ 0.29
HIF3A-201ENST00000244302 NUTM2EB1AL46 878 aaPredicted RBP16.89■□□□□ 0.29
HIF3A-201ENST00000244302 CSB-PGBD3P0DP91 1061 aa16.89■□□□□ 0.29
HIF3A-201ENST00000244302 NUTM2AQ8IVF1 878 aaPredicted RBP16.89■□□□□ 0.29
HIF3A-201ENST00000244302 COL18A1P39060 1754 aa16.89■□□□□ 0.29
HIF3A-201ENST00000244302 ADAMTS2O95450 1211 aa16.88■□□□□ 0.29
HIF3A-201ENST00000244302 STRN4Q9NRL3 753 aa16.88■□□□□ 0.29
HIF3A-201ENST00000244302 E9PSI1 815 aa16.88■□□□□ 0.29
HIF3A-201ENST00000244302 WDR63Q8IWG1 891 aa16.88■□□□□ 0.29
HIF3A-201ENST00000244302 CAMTA1Q9Y6Y1 1673 aa16.88■□□□□ 0.29
HIF3A-201ENST00000244302 CPDO75976 1380 aa16.87■□□□□ 0.29
HIF3A-201ENST00000244302 PLIN1O60240 522 aa16.87■□□□□ 0.29
HIF3A-201ENST00000244302 RCAN3Q9UKA8 241 aa16.87■□□□□ 0.29
HIF3A-201ENST00000244302 AHDC1Q5TGY3 1603 aaPredicted RBP16.86■□□□□ 0.29
HIF3A-201ENST00000244302 MIS18AQ9NYP9 233 aa16.86■□□□□ 0.29
HIF3A-201ENST00000244302 LARP1Q6PKG0 1096 aaKnown RBP16.85■□□□□ 0.29
HIF3A-201ENST00000244302 NGEFQ8N5V2 710 aa16.85■□□□□ 0.29
HIF3A-201ENST00000244302 USP35Q9P2H5 1018 aa16.85■□□□□ 0.29
HIF3A-201ENST00000244302 BTG4Q9NY30 223 aa16.84■□□□□ 0.29
HIF3A-201ENST00000244302 DLG5Q8TDM6 1919 aa16.84■□□□□ 0.29
HIF3A-201ENST00000244302 PHLPP1O60346 1717 aa16.84■□□□□ 0.29
HIF3A-201ENST00000244302 FANCIQ9NVI1 1328 aa16.84■□□□□ 0.29
HIF3A-201ENST00000244302 COL16A1Q07092 1604 aaPredicted RBP16.83■□□□□ 0.29
HIF3A-201ENST00000244302 ABCA3Q99758 1704 aa16.83■□□□□ 0.28
HIF3A-201ENST00000244302 BCAR3O75815 825 aa16.82■□□□□ 0.28
HIF3A-201ENST00000244302 EXOSC9Q06265 439 aaKnown RBP16.82■□□□□ 0.28
HIF3A-201ENST00000244302 IL17REQ8NFR9 667 aa16.82■□□□□ 0.28
HIF3A-201ENST00000244302 LGR6Q9HBX8 967 aa16.82■□□□□ 0.28
HIF3A-201ENST00000244302 TOM1L2Q6ZVM7 507 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms