RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 AGERQ15109 404 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 UGP2Q16851 508 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 CFAP58Q5T655 872 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 LEKR1Q6ZMV7 388 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 RFX6Q8HWS3 928 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 RAVER1Q8IY67 606 aaKnown RBP18.46■□□□□ 0.55
CLN3-259ENST00000637551 RNF25Q96BH1 459 aaPredicted RBP18.46■□□□□ 0.55
CLN3-259ENST00000637551 HES6Q96HZ4 224 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 LENG8Q96PV6 779 aaPredicted RBP18.46■□□□□ 0.55
CLN3-259ENST00000637551 ALS2CR12Q96Q35 445 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 IL12RB2Q99665 862 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 GOLPH3Q9H4A6 298 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 KCTD5Q9NXV2 234 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 HYOU1Q9Y4L1 999 aa18.46■□□□□ 0.55
CLN3-259ENST00000637551 TOR1BO14657 336 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 SLC30A4O14863 429 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 INSIG1O15503 277 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 CST8O60676 142 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 KRT10P13645 584 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 RPL26P61254 145 aaKnown RBP18.45■□□□□ 0.54
CLN3-259ENST00000637551 COL9A2Q14055 689 aaPredicted RBP18.45■□□□□ 0.54
CLN3-259ENST00000637551 PRKD1Q15139 912 aaPredicted RBP18.45■□□□□ 0.54
CLN3-259ENST00000637551 PPM1JQ5JR12 505 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 ERAP2Q6P179 960 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 ZCCHC9Q8N567 271 aaKnown RBP18.45■□□□□ 0.54
CLN3-259ENST00000637551 MFSD2AQ8NA29 543 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 TMEM145Q8NBT3 493 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 TRIM58Q8NG06 486 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 OR6K2Q8NGY2 324 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 KRT35Q92764 455 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 P3H4Q92791 437 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 FERMT1Q9BQL6 677 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 EDEM2Q9BV94 578 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 C1QTNF7Q9BXJ2 289 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 TM9SF3Q9HD45 589 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 TMEM9BQ9NQ34 198 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 DNAAF2Q9NVR5 837 aaKnown RBP18.45■□□□□ 0.54
CLN3-259ENST00000637551 DNPEPQ9ULA0 475 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 RPL26L1Q9UNX3 145 aaKnown RBP18.45■□□□□ 0.54
CLN3-259ENST00000637551 ATP8A1Q9Y2Q0 1164 aa18.45■□□□□ 0.54
CLN3-259ENST00000637551 TP53BP1Q12888 1972 aaPredicted RBP18.44■□□□□ 0.54
CLN3-259ENST00000637551 ASCC3Q8N3C0 2202 aaKnown RBP18.44■□□□□ 0.54
CLN3-259ENST00000637551 MUSKO15146 869 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 YKT6O15498 198 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 NEBLO76041 1014 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 TJP3O95049 919 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 CER1O95813 267 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 CFIP05156 583 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 HNRNPA2B1P22626 353 aaKnown RBP18.44■□□□□ 0.54
CLN3-259ENST00000637551 RGRP47804 291 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 MARCKSL1P49006 195 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 SCNN1BP51168 640 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 PPP2CBP62714 309 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 PPP2CAP67775 309 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 IRX4P78413 519 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 SF3A2Q15428 464 aaKnown RBP18.44■□□□□ 0.54
CLN3-259ENST00000637551 ZNF284Q2VY69 593 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 TMEM52BQ4KMG9 183 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 TTC7BQ86TV6 843 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 CCDC50Q8IVM0 306 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 OXR1Q8N573 874 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 CCNYQ8ND76 341 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 SNX19Q92543 992 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 EXOC2Q96KP1 924 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 C1QTNF2Q9BXJ5 285 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 OSBPL8Q9BZF1 889 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 ERVMER34-1Q9H9K5 563 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 SCUBE2Q9NQ36 999 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 PPIL1Q9Y3C6 166 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 HEY1Q9Y5J3 304 aa18.44■□□□□ 0.54
CLN3-259ENST00000637551 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.44■□□□□ 0.54
CLN3-259ENST00000637551 A0A1W2PQU0 124 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 FAM47DPA6NHR8 397 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 ENGP17813 658 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 XPAP23025 273 aaPredicted RBP18.43■□□□□ 0.54
CLN3-259ENST00000637551 CD38P28907 300 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 AKT2P31751 481 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 MMP12P39900 470 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 ABL2P42684 1182 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 POM121L1PQ3SYA9 428 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 DCP2Q8IU60 420 aaKnown RBP18.43■□□□□ 0.54
CLN3-259ENST00000637551 NDUFAF2Q8N183 169 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 PGBD5Q8N414 524 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 DEFB119Q8N690 84 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 TTC13Q8NBP0 860 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 TFB1MQ8WVM0 346 aaKnown RBP18.43■□□□□ 0.54
CLN3-259ENST00000637551 MIR1-1HGQ9H1L0 117 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 PCDHGB2Q9Y5G2 931 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 HS3ST3A1Q9Y663 406 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 CAPN6Q9Y6Q1 641 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 DOCK9Q9BZ29 2069 aa18.43■□□□□ 0.54
CLN3-259ENST00000637551 ATXN2Q99700 1313 aaKnown RBP18.43■□□□□ 0.54
CLN3-259ENST00000637551 PATE3B3GLJ2 98 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 RNF103O00237 685 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 RIOK3O14730 519 aaKnown RBP18.42■□□□□ 0.54
CLN3-259ENST00000637551 SPINT1O43278 529 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 PCDH8O95206 1070 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 TNNT1P13805 278 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 TIMP2P16035 220 aa18.42■□□□□ 0.54
CLN3-259ENST00000637551 GKP32189 559 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms