RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MVDP53602 400 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 ARSFP54793 590 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 BRWD1-AS2P59051 145 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 CHAF1AQ13111 956 aaPredicted RBP2.92□□□□□ -1.94
SCN1A-208ENST00000625916 RPE65Q16518 533 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 AMZ1Q400G9 498 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 ATP13A5Q4VNC0 1218 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 RRAGAQ7L523 313 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 ZNF248Q8NDW4 579 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 ZMIZ2Q8NF64 920 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 DEPTORQ8TB45 409 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 EID2BQ96D98 161 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 SPATS2LQ9NUQ6 558 aaKnown RBP2.92□□□□□ -1.94
SCN1A-208ENST00000625916 FNIP2Q9P278 1114 aa2.92□□□□□ -1.94
SCN1A-208ENST00000625916 ATXN2Q99700 1313 aaKnown RBP2.92□□□□□ -1.94
SCN1A-208ENST00000625916 MID1O15344 667 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 SEPT4O43236 478 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 RGS11O94810 467 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 SERPINC1P01008 464 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 PNPLA4P41247 253 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 CENPAP49450 140 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 THOC5Q13769 683 aaKnown RBP2.91□□□□□ -1.94
SCN1A-208ENST00000625916 KSR2Q6VAB6 950 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 CCNI2Q6ZMN8 369 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-208ENST00000625916 DSG4Q86SJ6 1040 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 LURAP1LQ8IV03 231 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 FAM186BQ8IYM0 893 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 CNBD1Q8NA66 436 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 SETD9Q8NE22 299 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 FAM76AQ8TAV0 307 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 TNIP3Q96KP6 325 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 TRAPPC9Q96Q05 1148 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 F2RL3Q96RI0 385 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 PABPC3Q9H361 631 aaKnown RBP2.91□□□□□ -1.94
SCN1A-208ENST00000625916 PLEKHA2Q9HB19 425 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 CHST12Q9NRB3 414 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 IFT80Q9P2H3 777 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-208ENST00000625916 CDC23Q9UJX2 597 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 CLDN16Q9Y5I7 305 aa2.91□□□□□ -1.94
SCN1A-208ENST00000625916 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.9□□□□□ -1.95
SCN1A-208ENST00000625916 TYW5A2RUC4 315 aaKnown RBP2.9□□□□□ -1.95
SCN1A-208ENST00000625916 LILRA5A6NI73 299 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 ATP2C2O75185 946 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 CDH1P12830 882 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 SRCP12931 536 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 HOXC13P31276 330 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 TTKP33981 857 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 PPM1AP35813 382 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 DRG2P55039 364 aaKnown RBP2.9□□□□□ -1.95
SCN1A-208ENST00000625916 BTKQ06187 659 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 GOLGA8FQ08AF8 430 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 CES5AQ6NT32 575 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 WDR73Q6P4I2 378 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 SYT13Q7L8C5 426 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 RASGRP2Q7LDG7 609 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 NFE4Q86UQ8 179 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF527Q8NB42 609 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 DNAAF1Q8NEP3 725 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 SGCZQ96LD1 299 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 ARFGAP3Q9NP61 516 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 ENTPD7Q9NQZ7 604 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 CYSLTR2Q9NS75 346 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 KLHL42Q9P2K6 505 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 NDRG3Q9UGV2 375 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 CDC14AQ9UNH5 594 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 CNPY2Q9Y2B0 182 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 PSAT1Q9Y617 370 aa2.9□□□□□ -1.95
SCN1A-208ENST00000625916 ASPDHA6ND91 283 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 FAM90A20PA6NIJ5 464 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 PMS2P5A8MQ11 134 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 SOCS6O14544 535 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 WNT9BO14905 357 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF500O60304 480 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-208ENST00000625916 RFPL2O75678 378 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 BAG4O95429 457 aaKnown RBP2.89□□□□□ -1.95
SCN1A-208ENST00000625916 ADAP00813 363 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 CSF1P09603 554 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 CD72P21854 359 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 STX2P32856 288 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 RBM5P52756 815 aaKnown RBP eCLIP2.89□□□□□ -1.95
SCN1A-208ENST00000625916 PNLIPRP1P54315 467 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 RELQ04864 619 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-208ENST00000625916 SLC20A2Q08357 652 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 ARHGEF6Q15052 776 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 PFKFB4Q16877 469 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 PAPPA-AS1Q5QFB9 102 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 ZNF497Q6ZNH5 498 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 SRLQ86TD4 932 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 CHD1LQ86WJ1 897 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 SPATA22Q8NHS9 363 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 LITAFQ99732 161 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 HERC2P3Q9BVR0 1158 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 NPLQ9BXD5 320 aaPredicted RBP2.89□□□□□ -1.95
SCN1A-208ENST00000625916 OBSCNQ5VST9 7968 aa2.89□□□□□ -1.95
SCN1A-208ENST00000625916 GREB1LQ9C091 1923 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-208ENST00000625916 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 DVL1O14640 695 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 NDUFS7O75251 213 aa2.88□□□□□ -1.95
SCN1A-208ENST00000625916 SKAP2O75563 359 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-208ENST00000625916 KRT38O76015 456 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms