RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 UPK3BL2E5RIL1 263 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 PGRMC1O00264 195 aaKnown RBP19.5■□□□□ 0.71
UPF1-209ENST00000600310 AREL1O15033 823 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 ZNF185O15231 689 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 PGLSO95336 258 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 STIP1P31948 543 aaKnown RBP19.5■□□□□ 0.71
UPF1-209ENST00000600310 CD86P42081 329 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 LPAL2Q16609 132 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 ANKRD20A2Q5SQ80 823 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 ANKRD20A1Q5TYW2 823 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 ANKRD20A3Q5VUR7 823 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 KIAA0895LQ68EN5 471 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 NEK5Q6P3R8 708 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 NYAP1Q6ZVC0 841 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 SLC41A1Q8IVJ1 513 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 FAM71DQ8N9W8 422 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 SPATA13Q96N96 652 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 FCRL5Q96RD9 977 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 TMEM121Q9BTD3 319 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 SAR1BQ9Y6B6 198 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3DA0A087WVF3 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3IA0A087WXS9 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3EA0A087X179 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3KA0A087X1G2 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3FA6NER0 549 aaPredicted RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3LB9A6J9 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 SPINT1O43278 529 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 FZD6O60353 706 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 OPHN1O60890 802 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 LMNAP02545 664 aaKnown RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3HP0C7X1 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 NFKB1P19838 968 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 CA4P22748 312 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 XPAP23025 273 aaPredicted RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 PTGER3P43115 390 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 CCR5P51681 352 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 POLR2LP62875 67 aaKnown RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 SNX1Q13596 522 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 ARMC12Q5T9G4 340 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3GQ6DHY5 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 ITPRIPL1Q6GPH6 555 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3CQ6IPX1 549 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TBC1D3Q8IZP1 549 aaPredicted RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 PAF1Q8N7H5 531 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 PRELID2Q8N945 189 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 RTP4Q96DX8 246 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 HSPA12BQ96MM6 686 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 RBM15Q96T37 977 aaKnown RBP eCLIP19.49■□□□□ 0.71
UPF1-209ENST00000600310 TDRD1Q9BXT4 1180 aaKnown RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 GBA3Q9H227 469 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 TPX2Q9ULW0 747 aaKnown RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 ZNF148Q9UQR1 794 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 DRG1Q9Y295 367 aaKnown RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.49■□□□□ 0.71
UPF1-209ENST00000600310 PCDHB9Q9Y5E1 797 aa19.49■□□□□ 0.71
UPF1-209ENST00000600310 ABCA7Q8IZY2 2146 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 TSPAN6O43657 245 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 GCATO75600 419 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 ITGAVP06756 1048 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 CASQ1P31415 396 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 DHPSP49366 369 aaPredicted RBP19.48■□□□□ 0.71
UPF1-209ENST00000600310 GDF10P55107 478 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 LYSMD4Q5XG99 296 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 LAIR1Q6GTX8 287 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 SYT10Q6XYQ8 523 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 TRIM69Q86WT6 500 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 SPATA22Q8NHS9 363 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 CCDC110Q8TBZ0 833 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 PDCD6IPQ8WUM4 868 aaKnown RBP19.48■□□□□ 0.71
UPF1-209ENST00000600310 PIH1D2Q8WWB5 315 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 DNASE2BQ8WZ79 361 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 BIRC7Q96CA5 298 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 PCDH12Q9NPG4 1184 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 SMARCAL1Q9NZC9 954 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 RSPH14Q9UHP6 348 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 PHTF1Q9UMS5 762 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 CHKBQ9Y259 395 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 NUMA1Q14980 2115 aa19.48■□□□□ 0.71
UPF1-209ENST00000600310 PRR23AA6NEV1 266 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 RIOK3O14730 519 aaKnown RBP19.47■□□□□ 0.71
UPF1-209ENST00000600310 PCDH8O95206 1070 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 MT-CYBP00156 380 aaPredicted RBP19.47■□□□□ 0.71
UPF1-209ENST00000600310 CPP00450 1065 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 PRLP01236 227 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 IGHV4-34P06331 123 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 PDHA1P08559 390 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 ITIH2P19823 946 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 RPL26P61254 145 aaKnown RBP19.47■□□□□ 0.71
UPF1-209ENST00000600310 ELP6Q0PNE2 266 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 CYP1B1Q16678 543 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 LRRC73Q5JTD7 316 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 SYCP2LQ5T4T6 812 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 ERAP2Q6P179 960 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 ARMCX6Q7L4S7 300 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 ZSCAN30Q86W11 494 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 FEM1CQ96JP0 617 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 PCDH9Q9HC56 1237 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 VPS45Q9NRW7 570 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 FAM153AQ9UHL3 310 aa19.47■□□□□ 0.71
UPF1-209ENST00000600310 RPL26L1Q9UNX3 145 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms