RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ITKQ08881 620 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 UGP2Q16851 508 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 RALGPS1Q5JS13 557 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 Q6ZSR6 202 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 GLRX5Q86SX6 157 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 NPWQ8N729 165 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 TMEM145Q8NBT3 493 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 TMEM131Q92545 1883 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 IFT43Q96FT9 208 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 SCNM1Q9BWG6 230 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 C1QTNF2Q9BXJ5 285 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 FZD3Q9NPG1 666 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 NENFQ9UMX5 172 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 PTPRBP23467 1997 aa14.27□□□□□ -0.12
LIG1-218ENST00000599322 PLXNB3Q9ULL4 1909 aa14.27□□□□□ -0.12
LIG1-218ENST00000599322 AREL1O15033 823 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 INSIG1O15503 277 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 SPOPO43791 374 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 MMP20O60882 483 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 PIGNO95427 931 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 FTH1P19P0C7X4 201 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 ZFXP17010 805 aaPredicted RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 CA4P22748 312 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 CES1P23141 567 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 EPHA8P29322 1005 aaPredicted RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 MMP13P45452 471 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 ZNF75DP51815 510 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 CLDN2P57739 230 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 HNRNPKP61978 463 aaKnown RBP eCLIP14.27□□□□□ -0.13
LIG1-218ENST00000599322 FAM193AP78312 1265 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 TBX2Q13207 712 aaPredicted RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 IFI16Q16666 785 aaKnown RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 ANKRD20A8PQ5CZ79 823 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 TXNRD3NBQ6F5E7 133 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 KYAT3Q6YP21 454 aaKnown RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 ABI3BPQ7Z7G0 1075 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 GATAD2AQ86YP4 633 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 CAMK1DQ8IU85 385 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 KDF1Q8NAX2 398 aaPredicted RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 OR13H1Q8NG92 308 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 ATL2Q8NHH9 583 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 GATA6Q92908 595 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 MRFAP1L1Q96HT8 127 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 WRAP53Q9BUR4 548 aaKnown RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 DDX56Q9NY93 547 aaKnown RBP14.27□□□□□ -0.13
LIG1-218ENST00000599322 ZMIZ1Q9ULJ6 1067 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 CA5BQ9Y2D0 317 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 ATP8A1Q9Y2Q0 1164 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 CHD5Q8TDI0 1954 aa14.27□□□□□ -0.13
LIG1-218ENST00000599322 LRRD1A4D1F6 860 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 RNF103O00237 685 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 CBFA2T3O75081 653 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 SOCS5O75159 536 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 MTA2O94776 668 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 HTR1BP28222 390 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 YPEL5P62699 121 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 SLC10A7Q0GE19 358 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 MMRN1Q13201 1228 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 DPYSL3Q14195 570 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 PAFAH1B3Q15102 231 aaKnown RBP14.26□□□□□ -0.13
LIG1-218ENST00000599322 TMEM52BQ4KMG9 183 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 CCDC157Q569K6 752 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 ARHGAP36Q6ZRI8 547 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 SPATS2Q86XZ4 545 aaKnown RBP14.26□□□□□ -0.13
LIG1-218ENST00000599322 TMTC1Q8IUR5 882 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 RHOT1Q8IXI2 618 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 TXLNBQ8N3L3 684 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 EID2Q8N6I1 236 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 CCNYQ8ND76 341 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 FAM71BQ8TC56 605 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 SAP25Q8TEE9 199 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 PDCD6IPQ8WUM4 868 aaKnown RBP14.26□□□□□ -0.13
LIG1-218ENST00000599322 BTN2A2Q8WVV5 523 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 ADAMTS14Q8WXS8 1223 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 TSC1Q92574 1164 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 CNDP2Q96KP4 475 aaKnown RBP14.26□□□□□ -0.13
LIG1-218ENST00000599322 CALR3Q96L12 384 aaKnown RBP14.26□□□□□ -0.13
LIG1-218ENST00000599322 NUDCD1Q96RS6 583 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 PCDH12Q9NPG4 1184 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 ETNK2Q9NVF9 386 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 DNAJC28Q9NX36 388 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 KCTD5Q9NXV2 234 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 ITM2BQ9Y287 266 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIG1-218ENST00000599322 NEUROG3Q9Y4Z2 214 aa14.26□□□□□ -0.13
LIG1-218ENST00000599322 PLXNA2O75051 1894 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 TSPAN11A1L157 253 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 CFAP69A5D8W1 941 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 ENC1O14682 589 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 RIOK3O14730 519 aaKnown RBP14.25□□□□□ -0.13
LIG1-218ENST00000599322 MAFKO60675 156 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 TNNT1P13805 278 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 KDELR1P24390 212 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 CCNCP24863 283 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 NAP1L1P55209 391 aaKnown RBP14.25□□□□□ -0.13
LIG1-218ENST00000599322 BNIP3Q12983 259 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 PDE1CQ14123 709 aaPredicted RBP14.25□□□□□ -0.13
LIG1-218ENST00000599322 LRRC14Q15048 493 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 ATP13A4Q4VNC1 1196 aa14.25□□□□□ -0.13
LIG1-218ENST00000599322 LRRC73Q5JTD7 316 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms