RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 NXNL1Q96CM4 212 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 ZNF689Q96CS4 500 aaPredicted RBP19.84■□□□□ 0.77
CLIP3-206ENST00000593074 FEM1CQ96JP0 617 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 SCYL1Q96KG9 808 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 SEMA3CQ99985 751 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 MFSD1Q9H3U5 465 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 COG4Q9H9E3 785 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 NKX1-2Q9UD57 310 aaPredicted RBP19.84■□□□□ 0.77
CLIP3-206ENST00000593074 PLA2G4CQ9UP65 541 aa19.84■□□□□ 0.77
CLIP3-206ENST00000593074 ZNF840PA6NDX5 716 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 MAGEC1O60732 1142 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 HOXD9P28356 352 aaPredicted RBP19.83■□□□□ 0.77
CLIP3-206ENST00000593074 GRIA4P48058 902 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 HK2P52789 917 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 DSG1Q02413 1049 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 ZNF235Q14590 738 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 CILP2Q8IUL8 1156 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 SLC39A11Q8N1S5 342 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 TDRD5Q8NAT2 981 aaKnown RBP19.83■□□□□ 0.77
CLIP3-206ENST00000593074 NUDCD1Q96RS6 583 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 MAGEH1Q9H213 219 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 CYP4F11Q9HBI6 524 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 RAP2CQ9Y3L5 183 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 COL4A6Q14031 1691 aa19.83■□□□□ 0.77
CLIP3-206ENST00000593074 LDB2O43679 373 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 DIAPH2O60879 1101 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 HMGA1P17096 107 aaKnown RBP19.83■□□□□ 0.76
CLIP3-206ENST00000593074 HLA-DPA1P20036 260 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 ALDH1A3P47895 512 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 SLC11A2P49281 568 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 KPNA2P52292 529 aaKnown RBP19.83■□□□□ 0.76
CLIP3-206ENST00000593074 RAP1GDS1P52306 607 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 TAF12Q16514 161 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 ACCSLQ4AC99 568 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 DNAL1Q4LDG9 190 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 RBM20Q5T481 1227 aaKnown RBP19.83■□□□□ 0.76
CLIP3-206ENST00000593074 CFAP52Q8N1V2 620 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 TTC8Q8TAM2 541 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 ILKAPQ9H0C8 392 aaPredicted RBP19.83■□□□□ 0.76
CLIP3-206ENST00000593074 MRPL46Q9H2W6 279 aaKnown RBP19.83■□□□□ 0.76
CLIP3-206ENST00000593074 C15orf41Q9Y2V0 281 aa19.83■□□□□ 0.76
CLIP3-206ENST00000593074 H3BNC9 293 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 DLX3O60479 287 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 GJB3O75712 270 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 GJB5O95377 273 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 EPOP01588 193 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 LMNAP02545 664 aaKnown RBP19.82■□□□□ 0.76
CLIP3-206ENST00000593074 FGF1P05230 155 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 CHRNGP07510 517 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 TPBGLP0DKB5 382 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 PGM1P36871 562 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 CCNG1P51959 295 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 GTF2A1P52655 376 aaPredicted RBP19.82■□□□□ 0.76
CLIP3-206ENST00000593074 SLC12A2P55011 1212 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 ACVR1Q04771 509 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 SLC14A2Q15849 920 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 ZNF789Q5FWF6 425 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 CFAP157Q5JU67 520 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 TMCO2Q7Z6W1 182 aaPredicted RBP19.82■□□□□ 0.76
CLIP3-206ENST00000593074 LMNTD2Q8IXW0 634 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 PEX13Q92968 403 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 MRPL57Q9BQC6 102 aaKnown RBP19.82■□□□□ 0.76
CLIP3-206ENST00000593074 TRPM5Q9NZQ8 1165 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 A0A0D9SEW6 157 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 MATN2O00339 956 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 COCHO43405 550 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 ARSDP51689 593 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 CDH4P55283 916 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 GNA12Q03113 381 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 CFAP61Q8NHU2 1237 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 STON2Q8WXE9 905 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 PLD4Q96BZ4 506 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 MYRFLQ96LU7 910 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 PRICKLE1Q96MT3 831 aaPredicted RBP19.82■□□□□ 0.76
CLIP3-206ENST00000593074 OLFM1Q99784 485 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 MGME1Q9BQP7 344 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 DCLRE1BQ9H816 532 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 IGSF5Q9NSI5 407 aa19.82■□□□□ 0.76
CLIP3-206ENST00000593074 ZFP37Q9Y6Q3 630 aaPredicted RBP19.82■□□□□ 0.76
CLIP3-206ENST00000593074 GNAZP19086 355 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 MPSTP25325 297 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 NUMBP49757 651 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 ASPHQ12797 758 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 OR52K2Q8NGK3 314 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 MAPK15Q8TD08 544 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 HEXDCQ8WVB3 486 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 IFT43Q96FT9 208 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 HERC2P3Q9BVR0 1158 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 SPG21Q9NZD8 308 aa19.81■□□□□ 0.76
CLIP3-206ENST00000593074 CPOXP36551 454 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 NAGLUP54802 743 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 DEFB103AP81534 67 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 LAMB3Q13751 1172 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 KPNB1Q14974 876 aaKnown RBP19.8■□□□□ 0.76
CLIP3-206ENST00000593074 SLC9B1Q4ZJI4 515 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 ARL13AQ5H913 290 aaPredicted RBP19.8■□□□□ 0.76
CLIP3-206ENST00000593074 METTL21CQ5VZV1 264 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 TMC7Q7Z402 723 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 HDAC10Q969S8 669 aa19.8■□□□□ 0.76
CLIP3-206ENST00000593074 TSPAN17Q96FV3 270 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms