RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 BCCIPQ9P287 314 aaKnown RBP eCLIP15.31■□□□□ 0.04
ATG4D-211ENST00000589753 DKK3Q9UBP4 350 aa15.31■□□□□ 0.04
ATG4D-211ENST00000589753 TPX2Q9ULW0 747 aaKnown RBP15.31■□□□□ 0.04
ATG4D-211ENST00000589753 SCML1Q9UN30 329 aa15.31■□□□□ 0.04
ATG4D-211ENST00000589753 PCDHB9Q9Y5E1 797 aa15.31■□□□□ 0.04
ATG4D-211ENST00000589753 LOC285095A0A1B0GVY8 99 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 TSPAN11A1L157 253 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 DNALI1O14645 258 aaPredicted RBP15.3■□□□□ 0.04
ATG4D-211ENST00000589753 RIOK3O14730 519 aaKnown RBP15.3■□□□□ 0.04
ATG4D-211ENST00000589753 HEXIM1O94992 359 aaKnown RBP15.3■□□□□ 0.04
ATG4D-211ENST00000589753 PAPSS2O95340 614 aaPredicted RBP15.3■□□□□ 0.04
ATG4D-211ENST00000589753 APBB3O95704 486 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 CPP00450 1065 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 PRLP01236 227 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 EPOP01588 193 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 PDHA1P08559 390 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 ACADMP11310 421 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 TPSB2P20231 275 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 ADRA1AP35348 466 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 POLR2LP62875 67 aaKnown RBP15.3■□□□□ 0.04
ATG4D-211ENST00000589753 SPARCL1Q14515 664 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 KCNJ11Q14654 390 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 TPSAB1Q15661 275 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 IZUMO3Q5VZ72 239 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 DUPD1Q68J44 220 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 NAPEPLDQ6IQ20 393 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 ANO7Q6IWH7 933 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 PCGF5Q86SE9 256 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 PPIL6Q8IXY8 311 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 CPT1BQ92523 772 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 TRIB3Q96RU7 358 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 TBL1YQ9BQ87 522 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 ADGRE3Q9BY15 652 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 DPH5Q9H2P9 285 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 SNX24Q9Y343 169 aa15.3■□□□□ 0.04
ATG4D-211ENST00000589753 ANKRD36A6QL64 1941 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 C16orf96A6NNT2 1141 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 NDC80O14777 642 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 SUN1O94901 812 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 NDST3O95803 873 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 AGTP01019 485 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 HLA-DPA1P20036 260 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 MAGEA6P43360 314 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RPL21P46778 160 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 EPHB1P54762 984 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RPL26P61254 145 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 TUBB4BP68371 445 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 CNTN1Q12860 1018 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 SFSWAPQ12872 951 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 OLIG2Q13516 323 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 GALNT3Q14435 633 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 SLC1A5Q15758 541 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 TTC31Q49AM3 519 aaPredicted RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 TEX35Q5T0J7 233 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RNASEH2BQ5TBB1 312 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 FBXL19Q6PCT2 694 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RANBP10Q6VN20 620 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 ERN2Q76MJ5 926 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 PARS2Q7L3T8 475 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 LINC00523Q86TU6 105 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RASSF3Q86WH2 238 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 ZSWIM9Q86XI8 627 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 HDDC3Q8N4P3 179 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 AADATQ8N5Z0 425 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 BBOF1Q8ND07 529 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 LPCAT1Q8NF37 534 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 MDGA1Q8NFP4 955 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 GANCQ8TET4 914 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 PIH1D2Q8WWB5 315 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 SPOCK2Q92563 424 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RMDN1Q96DB5 314 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 OMDQ99983 421 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 APOL2Q9BQE5 337 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 HDAC8Q9BY41 377 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 PHTF1Q9UMS5 762 aa15.29■□□□□ 0.04
ATG4D-211ENST00000589753 RPL26L1Q9UNX3 145 aaKnown RBP15.29■□□□□ 0.04
ATG4D-211ENST00000589753 A0A1W2PP55 124 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 TCRBV7S3A2A0A539 114 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 FAM86C2PA6NEL3 165 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 UPK3BL1B0FP48 263 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 ANKRD66B4E2M5 251 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 UPK3BL2E5RIL1 263 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 K7ESF4 209 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 PLK4O00444 970 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 LAMTOR5O43504 91 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 USP12O75317 370 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 RNASEH2AO75792 299 aaKnown RBP15.28■□□□□ 0.04
ATG4D-211ENST00000589753 SEC31AO94979 1220 aaKnown RBP15.28■□□□□ 0.04
ATG4D-211ENST00000589753 RHOXF2BP0C7M4 288 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 ATXN1LP0C7T5 689 aaKnown RBP15.28■□□□□ 0.04
ATG4D-211ENST00000589753 TIMP2P16035 220 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 ITIH2P19823 946 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 XPAP23025 273 aaPredicted RBP15.28■□□□□ 0.04
ATG4D-211ENST00000589753 DRD3P35462 400 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 P2RY2P41231 377 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 GRIA4P48058 902 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 NEK3P51956 506 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 SARNPP82979 210 aaKnown RBP15.28■□□□□ 0.04
ATG4D-211ENST00000589753 CDK16Q00536 496 aa15.28■□□□□ 0.04
ATG4D-211ENST00000589753 GUCY2DQ02846 1103 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms