RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 VPS36Q86VN1 386 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 ZNF548Q8NEK5 533 aaPredicted RBP20.69■□□□□ 0.9
SHMT1-209ENST00000582653 SNIP1Q8TAD8 396 aaKnown RBP20.69■□□□□ 0.9
SHMT1-209ENST00000582653 BTN2A2Q8WVV5 523 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 EDEM3Q9BZQ6 932 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 DONSONQ9NYP3 566 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 NCKIPSDQ9NZQ3 722 aa20.69■□□□□ 0.9
SHMT1-209ENST00000582653 TOR1BO14657 336 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 AQP9O43315 295 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 BRINP1O60477 761 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 BUB1BO60566 1050 aaPredicted RBP20.68■□□□□ 0.9
SHMT1-209ENST00000582653 LRCH4O75427 683 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 JUNDP17535 347 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 ERCC2P18074 760 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 RGRP47804 291 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 SUOXP51687 545 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 FANCCQ00597 558 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 EIF2B5Q13144 721 aaKnown RBP20.68■□□□□ 0.9
SHMT1-209ENST00000582653 ARHGAP12Q8IWW6 846 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 FNIP1Q8TF40 1166 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 CRELD1Q96HD1 420 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 NCAPGQ9BPX3 1015 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 ABCG4Q9H172 646 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 ISCUQ9H1K1 167 aa20.68■□□□□ 0.9
SHMT1-209ENST00000582653 MBNL1Q9NR56 388 aaKnown RBP20.68■□□□□ 0.9
SHMT1-209ENST00000582653 SMG1Q96Q15 3661 aaKnown RBP20.68■□□□□ 0.9
SHMT1-209ENST00000582653 ARHGAP42A6NI28 874 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 TCF4P15884 667 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 IGFALSP35858 605 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 THOP1P52888 689 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 KLHL40Q2TBA0 621 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 FIGNQ5HY92 759 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 AFMIDQ63HM1 303 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 HGSNATQ68CP4 663 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 ARHGAP36Q6ZRI8 547 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 CAMK1DQ8IU85 385 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 TP53INP2Q8IXH6 220 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 NPWQ8N729 165 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 TSEN2Q8NCE0 465 aaKnown RBP20.67■□□□□ 0.9
SHMT1-209ENST00000582653 CXorf40AQ8TE69 158 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 CPLX3Q8WVH0 158 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 BBC3Q96PG8 261 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-209ENST00000582653 DEPDC7Q96QD5 511 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 IL12RB2Q99665 862 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 C1QTNF7Q9BXJ2 289 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 SUV39H2Q9H5I1 410 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 CWC15Q9P013 229 aaKnown RBP20.67■□□□□ 0.9
SHMT1-209ENST00000582653 SPASTQ9UBP0 616 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 COQ6Q9Y2Z9 468 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 PCDHB1Q9Y5F3 818 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 SCINQ9Y6U3 715 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 ATRXP46100 2492 aa20.67■□□□□ 0.9
SHMT1-209ENST00000582653 EME2A4GXA9 379 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 EIF3CLB5ME19 914 aaKnown RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 DFFAO00273 331 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 PALMO75781 387 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 XPAP23025 273 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 PBX1P40424 430 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 GRM3Q14832 879 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 ACAP1Q15027 740 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 TBC1D25Q3MII6 688 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 TMEM52BQ4KMG9 183 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 TDRD12Q587J7 1177 aaKnown RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 ZSWIM9Q86XI8 627 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 LSMEM2Q8N112 164 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 IFI44Q8TCB0 444 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 LMX1AQ8TE12 382 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 EIF3CQ99613 913 aaKnown RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 TCEAL2Q9H3H9 227 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 PRORYQ9H606 182 aa20.66■□□□□ 0.9
SHMT1-209ENST00000582653 MRPL47Q9HD33 250 aaKnown RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 PNMA8BQ9ULN7 279 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-209ENST00000582653 PRKCGP05129 697 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 MYBL1P10243 752 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 IL1R2P27930 398 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 EIF4A3P38919 411 aaKnown RBP20.65■□□□□ 0.9
SHMT1-209ENST00000582653 UBASH3AP57075 661 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 UGP2Q16851 508 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 SMTNL2Q2TAL5 461 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 RBFAQ8N0V3 343 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 TP53I13Q8NBR0 393 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-209ENST00000582653 TRIM11Q96F44 468 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 TBATAQ96M53 351 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 PCDH12Q9NPG4 1184 aa20.65■□□□□ 0.9
SHMT1-209ENST00000582653 LZTS3O60299 673 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-209ENST00000582653 USP12O75317 370 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 GCATO75600 419 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 LSSP48449 732 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 PEX5P50542 639 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 TPM4P67936 248 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 ELP6Q0PNE2 266 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 CDKN3Q16667 212 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 DEFB133Q30KQ1 61 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 SRLQ86TD4 932 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 PSTKQ8IV42 348 aaKnown RBP20.64■□□□□ 0.89
SHMT1-209ENST00000582653 TPCN2Q8NHX9 752 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 MAPK15Q8TD08 544 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 BTBD6Q96KE9 485 aa20.64■□□□□ 0.89
SHMT1-209ENST00000582653 ZNF578Q96N58 590 aaPredicted RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms