RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 C5orf60A6NFR6 353 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 KCNU1A8MYU2 1149 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 EIF3HO15372 352 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-210ENST00000578700 BCAT2O15382 392 aaPredicted RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 MSI1O43347 362 aaKnown RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 CBFA2T3O75081 653 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 GCATO75600 419 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 NEBLO76041 1014 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 LRIG2O94898 1065 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 CER1O95813 267 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 MOCS2O96007 188 aaPredicted RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 PRB1P04280 392 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 IVLP07476 585 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 ACADMP11310 421 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 ETS1P14921 441 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 PHBP35232 272 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 CBX1P83916 185 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 HIF1AQ16665 826 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 HLA-BQ31612 363 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 FUT11Q495W5 492 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 RNASEH2BQ5TBB1 312 aaKnown RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 HTR3DQ70Z44 454 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 TMPRSS7Q7RTY8 843 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 TMPRSS6Q8IU80 811 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 ZNF276Q8N554 614 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 SIPA1Q96FS4 1042 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 BTN2A3PQ96KV6 586 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 FCRL2Q96LA5 508 aaPredicted RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 RBM15Q96T37 977 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-210ENST00000578700 KLF16Q9BXK1 252 aaPredicted RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 PHACTR1Q9C0D0 580 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 CENPHQ9H3R5 247 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 CD248Q9HCU0 757 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 TMPRSS4Q9NRS4 437 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 RAB6BQ9NRW1 208 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 SEPT10Q9P0V9 454 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 EIF2B4Q9UI10 523 aaKnown RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 DNMT3LQ9UJW3 386 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 FNDC3AQ9Y2H6 1198 aaKnown RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 HBS1LQ9Y450 684 aaKnown RBP10.33□□□□□ -0.76
SS18-210ENST00000578700 TENM4Q6N022 2769 aa10.33□□□□□ -0.76
SS18-210ENST00000578700 ATMQ13315 3056 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 A0A1B0GVT2 93 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 SLC12A8A0AV02 714 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 GOLGA6CA6NDK9 693 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 HMGB1P1B2RPK0 211 aaPredicted RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 FAM72CH0Y354 149 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 GFRA2O00451 464 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 POLR3GO15318 223 aaPredicted RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 MFSD11O43934 449 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 CACNG3O60359 315 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 SYNCRIPO60506 623 aaKnown RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 HMBSP08397 361 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 NUDT17P0C025 328 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 CISD3P0C7P0 127 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 GOLGA6DP0CG33 693 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 FDFT1P37268 417 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 SLC11A2P49281 568 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 HARS2P49590 506 aaKnown RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 CSNK1EP49674 416 aaKnown RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 TUBP50607 506 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 GDF10P55107 478 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 NRG1Q02297 640 aaPredicted RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 SLC29A2Q14542 456 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 KRT71Q3SY84 523 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 DNAJC21Q5F1R6 531 aaKnown RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 FAM72AQ5TYM5 149 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 SNX30Q5VWJ9 437 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 ITPRIPL1Q6GPH6 555 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 FAM72DQ6L9T8 149 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 IL27RAQ6UWB1 636 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 GLRX5Q86SX6 157 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 PRUNE1Q86TP1 453 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 FAM72BQ86X60 149 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 RELL1Q8IUW5 271 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 LRRC49Q8IUZ0 686 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 DNASE2BQ8WZ79 361 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 PRCCQ92733 491 aaPredicted RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 SPATA13Q96N96 652 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 OLFM3Q96PB7 478 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 VAT1Q99536 393 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 CDC6Q99741 560 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 DDX50Q9BQ39 737 aaKnown RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 TXLNGYQ9BZA5 131 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 MKRN2Q9H000 416 aaKnown RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 C10orf88Q9H8K7 445 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 USP29Q9HBJ7 922 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 SAYSD1Q9NPB0 183 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 ITM2CQ9NQX7 267 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 ETNK2Q9NVF9 386 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 GOLGA6AQ9NYA3 693 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 KIAA1522Q9P206 1035 aaPredicted RBP10.32□□□□□ -0.76
SS18-210ENST00000578700 VPS18Q9P253 973 aa10.32□□□□□ -0.76
SS18-210ENST00000578700 METTL12A8MUP2 240 aa10.31□□□□□ -0.76
SS18-210ENST00000578700 E9PAM4 449 aa10.31□□□□□ -0.76
SS18-210ENST00000578700 RNF103O00237 685 aa10.31□□□□□ -0.76
SS18-210ENST00000578700 RIPK2O43353 540 aa10.31□□□□□ -0.76
SS18-210ENST00000578700 GREM1O60565 184 aa10.31□□□□□ -0.76
SS18-210ENST00000578700 MAP3K6O95382 1288 aa10.31□□□□□ -0.76
SS18-210ENST00000578700 TTC4O95801 387 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms