RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 KLQ9UEF7 1012 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 VPS28Q9UK41 221 aa16.39■□□□□ 0.21
VPS53-218ENST00000575207 MOCS2O96007 188 aaPredicted RBP16.38■□□□□ 0.21
VPS53-218ENST00000575207 ABL2P42684 1182 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 CLCN6P51797 869 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 MAZP56270 477 aaKnown RBP16.38■□□□□ 0.21
VPS53-218ENST00000575207 SNRPFP62306 86 aaKnown RBP16.38■□□□□ 0.21
VPS53-218ENST00000575207 NUCB2P80303 420 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 PLEKHN1Q494U1 663 aaPredicted RBP16.38■□□□□ 0.21
VPS53-218ENST00000575207 ZNF394Q53GI3 561 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 EFHC1Q5JVL4 640 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 TTC39BQ5VTQ0 682 aaPredicted RBP16.38■□□□□ 0.21
VPS53-218ENST00000575207 NKAIN2Q5VXU1 208 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 KCTD16Q68DU8 428 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 TMEM71Q6P5X7 295 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 SLC47A2Q86VL8 602 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 KIAA1524Q8TCG1 905 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 SERPINB11Q96P15 392 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 C1QTNF7Q9BXJ2 289 aa16.38■□□□□ 0.21
VPS53-218ENST00000575207 NSD1Q96L73 2696 aaPredicted RBP16.37■□□□□ 0.21
VPS53-218ENST00000575207 F5H5T6 163 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 NEMP1O14524 444 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 SMAD6O43541 496 aaKnown RBP16.37■□□□□ 0.21
VPS53-218ENST00000575207 CHAF1BQ13112 559 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 CRB2Q5IJ48 1285 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 IRF2BP1Q8IU81 584 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 SIX6OS1Q8N1H7 587 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 ATL2Q8NHH9 583 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 ZNF507Q8TCN5 953 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 PDXPQ96GD0 296 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 ING2Q9H160 280 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 APOBEC3GQ9HC16 384 aaKnown RBP16.37■□□□□ 0.21
VPS53-218ENST00000575207 ACSS2Q9NR19 701 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 ITM2BQ9Y287 266 aa16.37■□□□□ 0.21
VPS53-218ENST00000575207 IGHV1OR21-1A0A087WYE8 117 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 GRID2O43424 1007 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 ZNF821O75541 412 aaPredicted RBP16.36■□□□□ 0.21
VPS53-218ENST00000575207 RRM1P23921 792 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 ANAPC15P60006 121 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 ZNF630Q2M218 657 aaPredicted RBP16.36■□□□□ 0.21
VPS53-218ENST00000575207 MCTP1Q6DN14 999 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 C6orf15Q6UXA7 325 aaPredicted RBP16.36■□□□□ 0.21
VPS53-218ENST00000575207 EPM2AIP1Q7L775 607 aaPredicted RBP16.36■□□□□ 0.21
VPS53-218ENST00000575207 ARHGAP22Q7Z5H3 698 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 C12orf56Q8IXR9 622 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 FAM186BQ8IYM0 893 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 SLC4A11Q8NBS3 891 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 DQX1Q8TE96 717 aaKnown RBP16.36■□□□□ 0.21
VPS53-218ENST00000575207 UBE2Q2Q8WVN8 375 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 IRGQQ8WZA9 623 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 SEC14L1Q92503 715 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 PRMT1Q99873 361 aaKnown RBP16.36■□□□□ 0.21
VPS53-218ENST00000575207 TNKS2Q9H2K2 1166 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 OSGIN2Q9Y236 505 aa16.36■□□□□ 0.21
VPS53-218ENST00000575207 AREL1O15033 823 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 POLR1CO15160 346 aaPredicted RBP16.35■□□□□ 0.21
VPS53-218ENST00000575207 TM7SF2O76062 418 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 LTFP02788 710 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 GJB2P29033 226 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 STAT1P42224 750 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 ADAM9Q13443 819 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 IRF4Q15306 451 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 C22orf39Q6P5X5 142 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 FOXR2Q6PJQ5 311 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 BNC2Q6ZN30 1099 aaPredicted RBP16.35■□□□□ 0.21
VPS53-218ENST00000575207 ZGRF1Q86YA3 2104 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 NXPE1Q8N323 547 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 ARHGEF26Q96DR7 871 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 BTN2A3PQ96KV6 586 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 WDR92Q96MX6 357 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 PSMB7Q99436 277 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 HEPHQ9BQS7 1158 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 CCDC39Q9UFE4 941 aa16.35■□□□□ 0.21
VPS53-218ENST00000575207 COPG1Q9Y678 874 aaKnown RBP16.35■□□□□ 0.21
VPS53-218ENST00000575207 FBN1P35555 2871 aaKnown RBP16.34■□□□□ 0.21
VPS53-218ENST00000575207 SNAP91O60641 907 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 HLA-DRAP01903 254 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 HTR1EP28566 365 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 ART1P52961 327 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 KRT83P78385 493 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 FOXM1Q08050 763 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 UGT8Q16880 541 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 VWA2Q5GFL6 755 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 RABGAP1LQ5R372 815 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 TAOK1Q7L7X3 1001 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 CCDC65Q8IXS2 484 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 C14orf79Q96F83 325 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 EPSTI1Q96J88 318 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 APOOQ9BUR5 198 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 C2orf49Q9BVC5 232 aaPredicted RBP16.34■□□□□ 0.21
VPS53-218ENST00000575207 ULBP3Q9BZM4 244 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 NIF3L1Q9GZT8 377 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 TMEM168Q9H0V1 697 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 GSX1Q9H4S2 264 aaPredicted RBP16.34■□□□□ 0.21
VPS53-218ENST00000575207 VPS51Q9UID3 782 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 TBC1D30Q9Y2I9 924 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 MYO7BQ6PIF6 2116 aa16.34■□□□□ 0.21
VPS53-218ENST00000575207 A0A1B0GUH1 482 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 ARGFXA6NJG6 315 aa16.33■□□□□ 0.2
VPS53-218ENST00000575207 C16orf96A6NNT2 1141 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms