RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TMEM11P17152 192 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CDH3P22223 829 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ACAT1P24752 427 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 DNAJB1P25685 340 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ZFP36P26651 326 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 TNFRSF8P28908 595 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CASP14P31944 242 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GTF2H1P32780 548 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PPARGP37231 505 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 VHLP40337 213 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MSH2P43246 934 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ABCG1P45844 678 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ZNF135P52742 658 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 IST1P53990 364 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 RAD23BP54727 409 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 EIF4A1P60842 406 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 NAA20P61599 178 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 NOP14P78316 857 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 PRAMEP78395 509 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CCNA1P78396 465 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 HSD11B2P80365 405 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PLIN5Q00G26 463 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CEBPZQ03701 1054 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 ZNF33BQ06732 778 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CSTF3Q12996 717 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 TARDBPQ13148 414 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS35-208ENST00000568612 MTM1Q13496 603 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TP53BP2Q13625 1128 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PDE1CQ14123 709 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 DHX34Q14147 1143 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 PTK2BQ14289 1009 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MVPQ14764 893 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 PUM3Q15397 648 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 SF3B4Q15427 424 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS35-208ENST00000568612 BEAN1Q3B7T3 259 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GRAMD1BQ3KR37 738 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 C3orf36Q3SXR2 165 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CCDC58Q4VC31 144 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SETMARQ53H47 684 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 CRB2Q5IJ48 1285 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TMEM63BQ5T3F8 832 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 C12orf60Q5U649 245 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 DUPD1Q68J44 220 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ERAP2Q6P179 960 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 OLFM4Q6UX06 510 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 STOX1Q6ZVD7 989 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SEM1Q6ZVN7 128 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 BNIPLQ7Z465 357 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CPLX4Q7Z7G2 160 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 LONP2Q86WA8 852 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SFR1Q86XK3 245 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 STX12Q86Y82 276 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 LDLRAD3Q86YD5 345 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ULK2Q8IYT8 1036 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MIER2Q8N344 545 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 RIBC1Q8N443 379 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 TCP11L2Q8N4U5 519 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CAMKK1Q8N5S9 505 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 AMER2Q8N7J2 671 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MAGEB6Q8N7X4 407 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CCDC197Q8NCU1 140 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PSD4Q8NDX1 1056 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CEP70Q8NHQ1 597 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TEX47Q8TBZ9 253 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TBC1D15Q8TC07 691 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 FANK1Q8TC84 345 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MGARPQ8TDB4 240 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CCDC12Q8WUD4 166 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 RASSF5Q8WWW0 418 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SEPT8Q92599 483 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CAVIN3Q969G5 261 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 HSPBAP1Q96EW2 488 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CLPTM1LQ96KA5 538 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CFAP57Q96MR6 1250 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CMTM3Q96MX0 182 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 RUNDC3BQ96NL0 473 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 RAB3IPQ96QF0 476 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 XPO6Q96QU8 1125 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 MED15Q96RN5 788 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 NUDCD1Q96RS6 583 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SELENOSQ9BQE4 189 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 NTPCRQ9BSD7 190 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 WACQ9BTA9 647 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 KATNAL1Q9BW62 490 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TEX13BQ9BXU2 312 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ALOXE3Q9BYJ1 711 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GHITMQ9H3K2 345 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 RNPEPQ9H4A4 650 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 DPEP3Q9H4B8 488 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 RNF41Q9H4P4 317 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 TAF1DQ9H5J8 278 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 SLITRK6Q9H5Y7 841 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MARCH7Q9H992 704 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PLGRKTQ9HBL7 147 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CRLF2Q9HC73 371 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MOV10Q9HCE1 1003 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 WDR6Q9NNW5 1121 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 FAM114A2Q9NRY5 505 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 KLHL11Q9NVR0 708 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ASNSD1Q9NWL6 643 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms