RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MAGEC1O60732 1142 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 MAP2K2P36507 400 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 CPOXP36551 454 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 VEGFBP49765 207 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 RAP1GDS1P52306 607 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 RPS24P62847 133 aaKnown RBP20.42■□□□□ 0.86
CLN3-230ENST00000568076 MTA1Q13330 715 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 ZNF235Q14590 738 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 LDB1Q86U70 411 aaPredicted RBP20.42■□□□□ 0.86
CLN3-230ENST00000568076 LSMEM2Q8N112 164 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 PRICKLE1Q96MT3 831 aaPredicted RBP20.42■□□□□ 0.86
CLN3-230ENST00000568076 ILKAPQ9H0C8 392 aaPredicted RBP20.42■□□□□ 0.86
CLN3-230ENST00000568076 MFSD1Q9H3U5 465 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 PAK6Q9NQU5 681 aaPredicted RBP20.42■□□□□ 0.86
CLN3-230ENST00000568076 RAP2CQ9Y3L5 183 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 MEI4A8MW99 385 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 MATN2O00339 956 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 SLC7A4O43246 635 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 PIGNO95427 931 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 KLKB1P03952 638 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 TUFMP49411 452 aaKnown RBP20.41■□□□□ 0.86
CLN3-230ENST00000568076 SGSHP51688 502 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 PRKAA2P54646 552 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 GNA12Q03113 381 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 TSNAXIP1Q2TAA8 658 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 TMC7Q7Z402 723 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 DENND1CQ8IV53 801 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 POU5F2Q8N7G0 328 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 KCNV2Q8TDN2 545 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 IGSF21Q96ID5 467 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 C1orf21Q9H246 121 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 MRPL46Q9H2W6 279 aaKnown RBP20.41■□□□□ 0.86
CLN3-230ENST00000568076 MARCH4Q9P2E8 410 aaPredicted RBP20.41■□□□□ 0.86
CLN3-230ENST00000568076 CHD5Q8TDI0 1954 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 ZBTB14O43829 449 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 NCF2P19878 526 aaPredicted RBP20.41■□□□□ 0.86
CLN3-230ENST00000568076 CLCN5P51795 746 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 SLC12A2P55011 1212 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 CFAP157Q5JU67 520 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 ALG1LQ6GMV1 187 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 FAM43BQ6ZT52 329 aaPredicted RBP20.41■□□□□ 0.86
CLN3-230ENST00000568076 PHTF2Q8N3S3 785 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 OR6P1Q8NGX9 317 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 OVCA2Q8WZ82 227 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 FEM1CQ96JP0 617 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 CLPTM1LQ96KA5 538 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 CEP295NLQ96MC4 621 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 NSMCE3Q96MG7 304 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 ZNF599Q96NL3 588 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 OR52B2Q96RD2 323 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 NACA2Q9H009 215 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 MAGEH1Q9H213 219 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 GKN1Q9NS71 199 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 ZDHHC2Q9UIJ5 367 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 MCM8Q9UJA3 840 aa20.41■□□□□ 0.86
CLN3-230ENST00000568076 E9PBE3 544 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 KLHL41O60662 606 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 S1PR4O95977 384 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 GLDCP23378 1020 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 SLC11A2P49281 568 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 RPL14P50914 215 aaKnown RBP20.4■□□□□ 0.86
CLN3-230ENST00000568076 CCNG1P51959 295 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 ACVR1Q04771 509 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 CSHL1Q14406 222 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 GALNT3Q14435 633 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 PTPRCAPQ14761 206 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 ARHGEF6Q15052 776 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 HECTD3Q5T447 861 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 GALNT7Q86SF2 657 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 ARHGAP24Q8N264 748 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 TXNDC5Q8NBS9 432 aaKnown RBP20.4■□□□□ 0.86
CLN3-230ENST00000568076 PDZD8Q8NEN9 1154 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 SGF29Q96ES7 293 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 IFT43Q96FT9 208 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 MRPL57Q9BQC6 102 aaKnown RBP20.4■□□□□ 0.86
CLN3-230ENST00000568076 TACO1Q9BSH4 297 aaKnown RBP20.4■□□□□ 0.86
CLN3-230ENST00000568076 SHCBP1LQ9BZQ2 653 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 SUDS3Q9H7L9 328 aaPredicted RBP20.4■□□□□ 0.86
CLN3-230ENST00000568076 ARL5AQ9Y689 179 aa20.4■□□□□ 0.86
CLN3-230ENST00000568076 GRID2O43424 1007 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 BUD23O43709 281 aaKnown RBP20.39■□□□□ 0.86
CLN3-230ENST00000568076 TM7SF2O76062 418 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 HLA-DPA1P20036 260 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 RGRP47804 291 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 CDH4P55283 916 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 SLC14A2Q15849 920 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 DNAL1Q4LDG9 190 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 HECTD2Q5U5R9 776 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 KLHDC10Q6PID8 442 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 BLOC1S5Q8TDH9 187 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 WBP2Q969T9 261 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 TBATAQ96M53 351 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 FAM161BQ96MY7 647 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 MGME1Q9BQP7 344 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 DCLRE1BQ9H816 532 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 AFF4Q9UHB7 1163 aaKnown RBP20.39■□□□□ 0.86
CLN3-230ENST00000568076 COL4A6Q14031 1691 aa20.39■□□□□ 0.86
CLN3-230ENST00000568076 VGLL3A8MV65 326 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 DCXO43602 365 aa20.39■□□□□ 0.85
CLN3-230ENST00000568076 STC2O76061 302 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms