RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PROX2Q3B8N5 592 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 TMEM52BQ4KMG9 183 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 TXNRD3NBQ6F5E7 133 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 ERAP2Q6P179 960 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 BRAT1Q6PJG6 821 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 TMCO3Q6UWJ1 677 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 PARGQ86W56 976 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 NIPA2Q8N8Q9 360 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 OR4C6Q8NH72 309 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 CSPG4P5Q96PW8 444 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 PCDH12Q9NPG4 1184 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 GPR27Q9NS67 375 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 H3BM21 787 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 SERPINA4P29622 427 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 RENBPP51606 427 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 ILKQ13418 452 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 LBRQ14739 615 aaKnown RBP20.92■□□□□ 0.94
CLN3-219ENST00000565778 HADHQ16836 314 aaKnown RBP20.92■□□□□ 0.94
CLN3-219ENST00000565778 KDM7AQ6ZMT4 941 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 TEKT4Q8WW24 435 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 MBNL1Q9NR56 388 aaKnown RBP20.92■□□□□ 0.94
CLN3-219ENST00000565778 ETNK2Q9NVF9 386 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 SEPT3Q9UH03 358 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 COQ6Q9Y2Z9 468 aa20.92■□□□□ 0.94
CLN3-219ENST00000565778 COL5A1P20908 1838 aaPredicted RBP20.92■□□□□ 0.94
CLN3-219ENST00000565778 TAF4O00268 1085 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 RIOK3O14730 519 aaKnown RBP20.91■□□□□ 0.94
CLN3-219ENST00000565778 SCAMP1O15126 338 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 CAPNS1P04632 268 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 JUNDP17535 347 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 ACP1P24666 158 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 HNRNPH3P31942 346 aaKnown RBP20.91■□□□□ 0.94
CLN3-219ENST00000565778 HNF1BP35680 557 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 IGFALSP35858 605 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 CLDN6P56747 220 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 YPEL5P62699 121 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 KRT81Q14533 505 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 TSR1Q2NL82 804 aaKnown RBP20.91■□□□□ 0.94
CLN3-219ENST00000565778 SPECC1LQ69YQ0 1117 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 PDCD7Q8N8D1 485 aaKnown RBP20.91■□□□□ 0.94
CLN3-219ENST00000565778 OR8K1Q8NGG5 319 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 MDM1Q8TC05 714 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 ZNF599Q96NL3 588 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 TSPY26PQ9H489 355 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 PCDH18Q9HCL0 1135 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 ZNHIT6Q9NWK9 470 aaKnown RBP20.91■□□□□ 0.94
CLN3-219ENST00000565778 NLGN3Q9NZ94 848 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 CTTNBP2NLQ9P2B4 639 aa20.91■□□□□ 0.94
CLN3-219ENST00000565778 USP24Q9UPU5 2620 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 TSPAN11A1L157 253 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 LZTS3O60299 673 aaPredicted RBP20.9■□□□□ 0.94
CLN3-219ENST00000565778 NEBLO76041 1014 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 PRKCGP05129 697 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 GIMD1P0DJR0 217 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 NME1P15531 152 aaKnown RBP20.9■□□□□ 0.94
CLN3-219ENST00000565778 LIG3P49916 1009 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 CDH6P55285 790 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 POLR2LP62875 67 aaKnown RBP20.9■□□□□ 0.94
CLN3-219ENST00000565778 SEMG2Q02383 582 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 SLC25A11Q02978 314 aaKnown RBP20.9■□□□□ 0.94
CLN3-219ENST00000565778 SLC10A7Q0GE19 358 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 LRRC14Q15048 493 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 TPRG1LQ5T0D9 272 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 TMCO4Q5TGY1 634 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 PROSER1Q86XN7 944 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 TP53I13Q8NBR0 393 aaPredicted RBP20.9■□□□□ 0.94
CLN3-219ENST00000565778 ZNF564Q8TBZ8 553 aaPredicted RBP20.9■□□□□ 0.94
CLN3-219ENST00000565778 BTN2A2Q8WVV5 523 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 PSKH2Q96QS6 385 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 DUSP23Q9BVJ7 150 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 DEF6Q9H4E7 631 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 KLF15Q9UIH9 416 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 ATP8A1Q9Y2Q0 1164 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 PTPRBP23467 1997 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 PLXNB3Q9ULL4 1909 aa20.9■□□□□ 0.94
CLN3-219ENST00000565778 TOR1BO14657 336 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 MUSKO15146 869 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 TPM1P09493 284 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 H2AFZP0C0S5 128 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 C6P13671 934 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 E2F1Q01094 437 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 CYP4F3Q08477 520 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 EIF2B5Q13144 721 aaKnown RBP20.89■□□□□ 0.93
CLN3-219ENST00000565778 TARDBPQ13148 414 aaKnown RBP eCLIP20.89■□□□□ 0.93
CLN3-219ENST00000565778 CAMK2BQ13554 666 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 TRIM14Q14142 442 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 ZNF235Q14590 738 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 FAXCQ5TGI0 409 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 HES3Q5TGS1 186 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 H2AFVQ71UI9 128 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 ZSWIM9Q86XI8 627 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 BBS5Q8N3I7 341 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 LMX1AQ8TE12 382 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 NSMCE1Q8WV22 266 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 CTNNBL1Q8WYA6 563 aaPredicted RBP20.89■□□□□ 0.93
CLN3-219ENST00000565778 CSNK1G3Q9Y6M4 447 aa20.89■□□□□ 0.93
CLN3-219ENST00000565778 TTC24A2A3L6 582 aaPredicted RBP20.88■□□□□ 0.93
CLN3-219ENST00000565778 K7ESM1 405 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 AQP9O43315 295 aa20.88■□□□□ 0.93
CLN3-219ENST00000565778 MAFKO60675 156 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms