RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 LZTR1Q8N653 840 aa15.02■□□□□ -0
CLN3-213ENST00000565047 TEKT4Q8WW24 435 aa15.02■□□□□ -0
CLN3-213ENST00000565047 SPOCK2Q92563 424 aa15.02■□□□□ -0
CLN3-213ENST00000565047 CSPG4P5Q96PW8 444 aa15.02■□□□□ -0
CLN3-213ENST00000565047 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.02■□□□□ -0
CLN3-213ENST00000565047 XPO4Q9C0E2 1151 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 IPO11Q9UI26 975 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 LUC7L2Q9Y383 392 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 PKD1L2Q7Z442 2459 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 TRABD2BA6NFA1 517 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 GOLGA6L19H0YKK7 550 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 MAFKO60675 156 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 TM7SF2O76062 418 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 CR2P20023 1033 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 AMPD1P23109 780 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 SLC10A7Q0GE19 358 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 PDE1CQ14123 709 aaPredicted RBP15.01□□□□□ -0.01
CLN3-213ENST00000565047 RFTN1Q14699 578 aaPredicted RBP15.01□□□□□ -0.01
CLN3-213ENST00000565047 SMTNL2Q2TAL5 461 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 WSCD2Q2TBF2 565 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 PTAR1Q7Z6K3 402 aaPredicted RBP15.01□□□□□ -0.01
CLN3-213ENST00000565047 SRLQ86TD4 932 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 PARGQ86W56 976 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 CPNE8Q86YQ8 564 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 CACTIN-AS1Q8N1I8 211 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 FAM181AQ8N9Y4 354 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 MDM1Q8TC05 714 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 PSKH2Q96QS6 385 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 NUP85Q9BW27 656 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 PCDH18Q9HCL0 1135 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 PCDH12Q9NPG4 1184 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 NLGN3Q9NZ94 848 aa15.01□□□□□ -0.01
CLN3-213ENST00000565047 K7ESM1 405 aa15□□□□□ -0.01
CLN3-213ENST00000565047 DFFAO00273 331 aa15□□□□□ -0.01
CLN3-213ENST00000565047 NEMP1O14524 444 aa15□□□□□ -0.01
CLN3-213ENST00000565047 DAPK3O43293 454 aa15□□□□□ -0.01
CLN3-213ENST00000565047 PALMO75781 387 aa15□□□□□ -0.01
CLN3-213ENST00000565047 CKMT1AP12532 417 aa15□□□□□ -0.01
CLN3-213ENST00000565047 GM2AP17900 193 aa15□□□□□ -0.01
CLN3-213ENST00000565047 PTMSP20962 102 aa15□□□□□ -0.01
CLN3-213ENST00000565047 MMP12P39900 470 aa15□□□□□ -0.01
CLN3-213ENST00000565047 HNRNPKP61978 463 aaKnown RBP eCLIP15□□□□□ -0.01
CLN3-213ENST00000565047 YPEL5P62699 121 aa15□□□□□ -0.01
CLN3-213ENST00000565047 INSM1Q01101 510 aaPredicted RBP15□□□□□ -0.01
CLN3-213ENST00000565047 RALGDSQ12967 914 aa15□□□□□ -0.01
CLN3-213ENST00000565047 CCDC157Q569K6 752 aa15□□□□□ -0.01
CLN3-213ENST00000565047 BRAT1Q6PJG6 821 aa15□□□□□ -0.01
CLN3-213ENST00000565047 PGBD5Q8N414 524 aa15□□□□□ -0.01
CLN3-213ENST00000565047 ZNF548Q8NEK5 533 aaPredicted RBP15□□□□□ -0.01
CLN3-213ENST00000565047 ZNF599Q96NL3 588 aa15□□□□□ -0.01
CLN3-213ENST00000565047 DNAJC7Q99615 494 aa15□□□□□ -0.01
CLN3-213ENST00000565047 WRAP53Q9BUR4 548 aaKnown RBP15□□□□□ -0.01
CLN3-213ENST00000565047 CCDC86Q9H6F5 360 aaKnown RBP15□□□□□ -0.01
CLN3-213ENST00000565047 ZWILCHQ9H900 591 aa15□□□□□ -0.01
CLN3-213ENST00000565047 STAU2Q9NUL3 570 aaKnown RBP eCLIP15□□□□□ -0.01
CLN3-213ENST00000565047 DNAJC28Q9NX36 388 aa15□□□□□ -0.01
CLN3-213ENST00000565047 IP6K2Q9UHH9 426 aa15□□□□□ -0.01
CLN3-213ENST00000565047 ANAPC7Q9UJX3 599 aa15□□□□□ -0.01
CLN3-213ENST00000565047 CSNK1G3Q9Y6M4 447 aa15□□□□□ -0.01
CLN3-213ENST00000565047 LRRK1Q38SD2 2015 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 CFAP69A5D8W1 941 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 H3BRJ5 948 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 TOR1BO14657 336 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 NEBLO76041 1014 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 PRKCGP05129 697 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 CD48P09326 243 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 C6P13671 934 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 ELP6Q0PNE2 266 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 LBRQ14739 615 aaKnown RBP14.99□□□□□ -0.01
CLN3-213ENST00000565047 IRF4Q15306 451 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 ATP13A4Q4VNC1 1196 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 CCDC122Q5T0U0 273 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 VPS36Q86VN1 386 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 CBARPQ8N350 705 aaPredicted RBP14.99□□□□□ -0.01
CLN3-213ENST00000565047 PDCD7Q8N8D1 485 aaKnown RBP14.99□□□□□ -0.01
CLN3-213ENST00000565047 CXorf40AQ8TE69 158 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 HSPH1Q92598 858 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 APOLD1Q96LR9 279 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 TBATAQ96M53 351 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 TCEAL2Q9H3H9 227 aaPredicted RBP14.99□□□□□ -0.01
CLN3-213ENST00000565047 ATP8A1Q9Y2Q0 1164 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 COQ6Q9Y2Z9 468 aa14.99□□□□□ -0.01
CLN3-213ENST00000565047 DSPP15924 2871 aaKnown RBP14.99□□□□□ -0.01
CLN3-213ENST00000565047 FFAR2O15552 330 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 HTRA2O43464 458 aaPredicted RBP14.98□□□□□ -0.01
CLN3-213ENST00000565047 GCATO75600 419 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 MYF5P13349 255 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 EIF4A3P38919 411 aaKnown RBP14.98□□□□□ -0.01
CLN3-213ENST00000565047 LIG3P49916 1009 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 SLC18A3Q16572 532 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 SKOR2Q2VWA4 1001 aaPredicted RBP14.98□□□□□ -0.01
CLN3-213ENST00000565047 HES3Q5TGS1 186 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 TMCO4Q5TGY1 634 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 CDCP2Q5VXM1 449 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 TMCO3Q6UWJ1 677 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 NYAP1Q6ZVC0 841 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 DCBLD1Q8N8Z6 715 aa14.98□□□□□ -0.01
CLN3-213ENST00000565047 FUBP1Q96AE4 644 aaKnown RBP14.98□□□□□ -0.01
CLN3-213ENST00000565047 CINPQ9BW66 212 aaPredicted RBP14.98□□□□□ -0.01
CLN3-213ENST00000565047 PACSIN1Q9BY11 444 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms