RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	PTCD2	Q8WV60	388 aa	Known RBP	11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	TANK	Q92844	425 aa		11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	EBNA1BP2	Q99848	306 aa	Known RBP	11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	EFHD1	Q9BUP0	239 aa		11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	SDCBP2	Q9H190	292 aa		11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	ANLN	Q9NQW6	1124 aa		11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	DUS2	Q9NX74	493 aa	Known RBP	11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	KLHL3	Q9UH77	587 aa		11.17	□□□□□ -0.62
TCF4-222	ENST00000564228	PIR	O00625	290 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	EOMES	O95936	686 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	CXCL10	P02778	98 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	PRKCG	P05129	697 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	C7	P10643	843 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	CYP3A5	P20815	502 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	ITGB8	P26012	769 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	CCT8	P50990	548 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	TMBIM6	P55061	237 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	PKNOX1	P55347	436 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	NME5	P56597	212 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	ATP6V0D1	P61421	351 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	NFATC3	Q12968	1075 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	PDE1C	Q14123	709 aa	Predicted RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	CYP2A13	Q16696	494 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	ARL13B	Q3SXY8	428 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	SLC9B1	Q4ZJI4	515 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	FGD3	Q5JSP0	725 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	AGAP7P	Q5VUJ5	663 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	STEAP4	Q687X5	459 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	TTC33	Q6PID6	262 aa	Predicted RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	GLB1L	Q6UWU2	654 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	SIX6OS1	Q8N1H7	587 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	MYO1H	Q8N1T3	1032 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	SLC15A4	Q8N697	577 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	LRRC52	Q8N7C0	313 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	CMAS	Q8NFW8	434 aa	Predicted RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	PNPT1	Q8TCS8	783 aa	Known RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	SREK1	Q8WXA9	508 aa	Known RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	ACD	Q96AP0	544 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	RCN3	Q96D15	328 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	ZNF560	Q96MR9	790 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	YTHDF1	Q9BYJ9	559 aa	Known RBP	11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	BCO2	Q9BYV7	579 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	C8orf4	Q9NR00	106 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	RAB6B	Q9NRW1	208 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	MOCS1	Q9NZB8	636 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	PACSIN3	Q9UKS6	424 aa		11.16	□□□□□ -0.62
TCF4-222	ENST00000564228	GOLGA8Q	A0A0J9YX86	632 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TCRBV3S1	A0A5B6	114 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	GOLGA8O	A6NCC3	632 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	GOLGA8N	F8WBI6	632 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LRCH4	O75427	683 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ALDH1A2	O94788	518 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	VAPB	O95292	243 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	STAU1	O95793	577 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TOP3B	O95985	862 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	BMP2	P12643	396 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PSMA2	P25787	234 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	SERPINB5	P36952	375 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PCYT1A	P49585	367 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TAF6	P49848	677 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CLCNKB	P51801	687 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	YWHAE	P62258	255 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	SLC10A2	Q12908	348 aa	Predicted RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	BNIP3	Q12983	259 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ORC1	Q13415	861 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ART3	Q13508	389 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TFDP2	Q14188	446 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	RAB39A	Q14964	217 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CLLU1OS	Q5K130	101 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LINC00299	Q6ZSB3	139 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ZNF606	Q8WXB4	792 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ATP6V1E2	Q96A05	226 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	SIGLEC10	Q96LC7	697 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TMEM161A	Q9NX61	479 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LRFN2	Q9ULH4	789 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PCDHB7	Q9Y5E2	793 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CPQ	Q9Y646	472 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LTBP2	Q14767	1821 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	KPNA7	A9QM74	516 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PLOD2	O00469	737 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TPP1	O14773	563 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	PAPSS1	O43252	624 aa	Predicted RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	FOXD2	O60548	495 aa	Predicted RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	RSL1D1	O76021	490 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CLPX	O76031	633 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	HSPA4L	O95757	839 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TIMP1	P01033	207 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ALDOA	P04075	364 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	ENO3	P13929	434 aa	Predicted RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CSF2RA	P15509	400 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	NELFE	P18615	380 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TPSB2	P20231	275 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CCNA2	P20248	432 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	CD247	P20963	164 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	IL1R2	P27930	398 aa		11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	TKT	P29401	623 aa	Known RBP	11.15	□□□□□ -0.62
TCF4-222	ENST00000564228	LRPAP1	P30533	357 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 49 ms