RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 MORF4L1Q9UBU8 362 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 VPS51Q9UID3 782 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CNTNAP5Q8WYK1 1306 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 UPK1BO75841 260 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 NUDT7P0C024 238 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 HPCAL1P37235 193 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 GALNT1Q10472 559 aaPredicted RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 IL18Q14116 193 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FAM102AQ5T9C2 384 aaPredicted RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 PGM2L1Q6PCE3 622 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 UBE2J2Q8N2K1 259 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TFB1MQ8WVM0 346 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 CPA5Q8WXQ8 436 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 LRTOMTQ8WZ04 291 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FICDQ9BVA6 458 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SLC7A5P2Q9GIP4 190 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 SYNDIG1Q9H7V2 258 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 RGS18Q9NS28 235 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 TMEM216Q9P0N5 145 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 XPR1Q9UBH6 696 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 NCKAP1Q9Y2A7 1128 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 LYVE1Q9Y5Y7 322 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ZNF682O95780 498 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 RAB3AP20336 220 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 MCAMP43121 646 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 HLCSP50747 726 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 RHBDL3P58872 404 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 PCDH1Q08174 1060 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 HKDC1Q2TB90 917 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 FUT11Q495W5 492 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 ZNF667Q5HYK9 610 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 COLEC12Q5KU26 742 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 C3orf33Q6P1S2 294 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CCBE1Q6UXH8 406 aaPredicted RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 ZC3H7AQ8IWR0 971 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 CHURC1Q8WUH1 139 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 CPXM1Q96SM3 734 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 REEP2Q9BRK0 252 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 LRRC4CQ9HCJ2 640 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 EIF3KQ9UBQ5 218 aaKnown RBP6.3□□□□□ -1.4
CLK3-212ENST00000563418 NUMBLQ9Y6R0 609 aa6.3□□□□□ -1.4
CLK3-212ENST00000563418 LIASO43766 372 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 MRPS14O60783 128 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 KDM4BO94953 1096 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 KCNH1O95259 989 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CST1P01037 141 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 MBL2P11226 248 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 ANXA3P12429 323 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ACADSBP45954 432 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 RAB2AP61019 212 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 FLI1Q01543 452 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 WSCD2Q2TBF2 565 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SLC5A5Q92911 643 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ZNF669Q96BR6 464 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 SLC7A6OSQ96CW6 309 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 FAM120BQ96EK7 910 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 CRELD1Q96HD1 420 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 REXO5Q96IC2 774 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 ANKRD60Q9BZ19 345 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 NFKBIL1Q9UBC1 381 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 LIMD1Q9UGP4 676 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 H3BMQ9 156 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TPP1O14773 563 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CFBP00751 764 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 MYL3P08590 195 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CD6P30203 668 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PTGER2P43116 358 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TBATAQ96M53 351 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 COG8Q96MW5 612 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TRIM54Q9BYV2 358 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 INO80BQ9C086 356 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 BLOC1S4Q9NUP1 217 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ZNF451Q9Y4E5 1061 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 PAHP00439 452 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 HMBSP08397 361 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ITGA2P17301 1181 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 KELP23276 732 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 SOX11P35716 441 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 EIF2DP41214 584 aaKnown RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 POLD2P49005 469 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 HGSNATQ68CP4 663 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CREB3L2Q70SY1 520 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ARMCX2Q7L311 632 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TMEM132CQ8N3T6 1108 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 LZTR1Q8N653 840 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.29□□□□□ -1.4
CLK3-212ENST00000563418 DPF3Q92784 378 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 KLHL11Q9NVR0 708 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 HPF1Q9NWY4 346 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ACTR10Q9NZ32 417 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ROBO3Q96MS0 1386 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 DLGAP1O14490 977 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 POLR1CO15160 346 aaPredicted RBP6.29□□□□□ -1.4
CLK3-212ENST00000563418 MYF6P23409 242 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 NTRK3Q16288 839 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 CDO1Q16878 200 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 TBCBQ99426 244 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 ITPAQ9BY32 194 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 MROQ9BYG7 248 aa6.29□□□□□ -1.4
CLK3-212ENST00000563418 OR51B5Q9H339 312 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms