RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 FBXO5Q9UKT4 447 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PCDHGB4Q9UN71 923 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ASF1AQ9Y294 204 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 A0A096LPK6 155 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 TCP11X1B4DZS4 312 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 GABRDO14764 452 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 MATN3O15232 486 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PIGNO95427 931 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 NDST3O95803 873 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 HSPA9P38646 679 aaKnown RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 PRKAA1Q13131 559 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 DHCR24Q15392 516 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PLEKHG6Q3KR16 790 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ACAD11Q709F0 780 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 CHST15Q7LFX5 561 aaPredicted RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 IGSF8Q969P0 613 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 NECTIN4Q96NY8 510 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 SLC22A12Q96S37 553 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ARL15Q9NXU5 204 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 APPL1Q9UKG1 709 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PSMD13Q9UNM6 376 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 GPR179Q6PRD1 2367 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 WNK3Q9BYP7 1800 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 TRIP12Q14669 1992 aaPredicted RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 DDX3YO15523 660 aaKnown RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 TULP3O75386 442 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PAK4O96013 591 aaPredicted RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 ITGAVP06756 1048 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 ADRA1DP25100 572 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 OVGP1Q12889 678 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 OLIG2Q13516 323 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 DPYSL2Q16555 572 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 LRRC57Q8N9N7 239 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 OR52K2Q8NGK3 314 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 PRMT1Q99873 361 aaKnown RBP9.31□□□□□ -0.92
VPS39-205ENST00000562258 CDH7Q9ULB5 785 aa9.31□□□□□ -0.92
VPS39-205ENST00000562258 SEC16AO15027 2179 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ANKRD65E5RJM6 399 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 K7ERQ8 282 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A9O60656 530 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 KLF8O95600 359 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 CYP11A1P05108 521 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 FGF1P05230 155 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 DLDP09622 509 aaKnown RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 PGAM1P18669 254 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A6P19224 532 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 HLA-DPA1P20036 260 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A1P22309 533 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A4P22310 534 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A3P35503 534 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A5P35504 534 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 GDF10P55107 478 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 FAM189BP81408 668 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 DNAJC3Q13217 504 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PRKG2Q13237 762 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 COL9A2Q14055 689 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 CAPRIN1Q14444 709 aaKnown RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 PON2Q15165 354 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 CHI3L2Q15782 390 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PDCD2Q16342 344 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 ASTE1Q2TB18 679 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 SH2D4BQ5SQS7 431 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 SLC8B1Q6J4K2 584 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 NAPRTQ6XQN6 538 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ARHGAP36Q6ZRI8 547 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 SRLQ86TD4 932 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 TMPRSS6Q8IU80 811 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 LINC01465Q8N7H1 131 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PEBP4Q96S96 227 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 RNF38Q9H0F5 515 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 LRRC19Q9H756 370 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A7Q9HAW7 530 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A10Q9HAW8 530 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 UGT1A8Q9HAW9 530 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PNPLA8Q9NP80 782 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 SPATA6Q9NWH7 488 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 NINJ2Q9NZG7 142 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 CTNNAL1Q9UBT7 734 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ZMYM5Q9UJ78 669 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 TIAM2Q8IVF5 1701 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 KDM1AO60341 852 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 CHN1P15882 459 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 CCNCP24863 283 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PTPN3P26045 913 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 DDX6P26196 483 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS39-205ENST00000562258 PRAMEF14Q5SWL7 426 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PDPK2PQ6A1A2 396 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 TXNDC5Q8NBS9 432 aaKnown RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 CMASQ8NFW8 434 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 MCOLN3Q8TDD5 553 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 SERPINB12Q96P63 405 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ACOX2Q99424 681 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 OSBPL2Q9H1P3 480 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 PHPT1Q9NRX4 125 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 CALCOCO1Q9P1Z2 691 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 RCOR3Q9P2K3 495 aaPredicted RBP9.3□□□□□ -0.92
VPS39-205ENST00000562258 IQCF5A8MTL0 148 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ZBTB14O43829 449 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 BAG2O95816 211 aa9.3□□□□□ -0.92
VPS39-205ENST00000562258 ARSAP15289 507 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms