RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 EIF2B5Q13144 721 aaKnown RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 GRM3Q14832 879 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 ACAP1Q15027 740 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 UGP2Q16851 508 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 SMTNL2Q2TAL5 461 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 TMEM52BQ4KMG9 183 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 BOLA3Q53S33 107 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 TDRD12Q587J7 1177 aaKnown RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 SRLQ86TD4 932 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 VPS36Q86VN1 386 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 PARGQ86W56 976 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 CAMK1DQ8IU85 385 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 FAM181AQ8N9Y4 354 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 TP53I13Q8NBR0 393 aaPredicted RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 DENND6BQ8NEG7 585 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 ZNF548Q8NEK5 533 aaPredicted RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 RFFLQ8WZ73 363 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 BTBD6Q96KE9 485 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 ZNF641Q96N77 438 aaPredicted RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 THAP2Q9H0W7 228 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 ZWILCHQ9H900 591 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 PCDH12Q9NPG4 1184 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 RAXQ9Y2V3 346 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 COQ6Q9Y2Z9 468 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 GPSM3Q9Y4H4 160 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 TP53BP1Q12888 1972 aaPredicted RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 SMG1Q96Q15 3661 aaKnown RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 A0A087X0T9 212 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 LY6G6EA0A0G2JKS1 128 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 TSPAN11A1L157 253 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 GOLGA6L19H0YKK7 550 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 FAM228BP0C875 321 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 ALPPL2P10696 532 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 JUNDP17535 347 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 XPAP23025 273 aaPredicted RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 IGFALSP35858 605 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 SUOXP51687 545 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 ZNF135P52742 658 aaPredicted RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 YPEL5P62699 121 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 DAB2P98082 770 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 E2F1Q01094 437 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 SEMG2Q02383 582 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 IL10RBQ08334 325 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 NSUN2Q08J23 767 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLK3-205ENST00000561673 ELP6Q0PNE2 266 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 RFTN1Q14699 578 aaPredicted RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 DPYSL2Q16555 572 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 TXNRD3NBQ6F5E7 133 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 BRAT1Q6PJG6 821 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 POLNQ7Z5Q5 900 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 ZSWIM9Q86XI8 627 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 LZTR1Q8N653 840 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 HSPH1Q92598 858 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 APOLD1Q96LR9 279 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 NSMCE3Q96MG7 304 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 TUBGCP5Q96RT8 1024 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 DUSP23Q9BVJ7 150 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 CINPQ9BW66 212 aaPredicted RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 C1QTNF7Q9BXJ2 289 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 TCEAL2Q9H3H9 227 aaPredicted RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 ATP13A3Q9H7F0 1226 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 SP110Q9HB58 689 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 ETNK2Q9NVF9 386 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 IFNKQ9P0W0 207 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 PNMA8BQ9ULN7 279 aaPredicted RBP10.38□□□□□ -0.75
CLK3-205ENST00000561673 U3KQA8 63 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 TRPM6Q9BX84 2022 aa10.38□□□□□ -0.75
CLK3-205ENST00000561673 H3BM21 787 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 H3BRJ5 948 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 MUSKO15146 869 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 AQP9O43315 295 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 GCATO75600 419 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 GYPCP04921 128 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 PRKCGP05129 697 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 CYP1A2P05177 515 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 RARAP10276 462 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 C6P13671 934 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 AMPD1P23109 780 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 EIF4A3P38919 411 aaKnown RBP10.37□□□□□ -0.75
CLK3-205ENST00000561673 LIG3P49916 1009 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 SCNN1BP51168 640 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 THOP1P52888 689 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 PTK2BQ14289 1009 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 PIGHQ14442 188 aaPredicted RBP10.37□□□□□ -0.75
CLK3-205ENST00000561673 LRRC14Q15048 493 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 IRF4Q15306 451 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 NFKBIBQ15653 356 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 WSCD2Q2TBF2 565 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 DEFB133Q30KQ1 61 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 ZSCAN23Q3MJ62 389 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 CFAP58Q5T655 872 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 ERAP2Q6P179 960 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 ALKBH5Q6P6C2 394 aaKnown RBP10.37□□□□□ -0.75
CLK3-205ENST00000561673 C19orf48Q6RUI8 117 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 CACTIN-AS1Q8N1I8 211 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 NIPA2Q8N8Q9 360 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 DCBLD1Q8N8Z6 715 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 LMX1AQ8TE12 382 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 IQCDQ96DY2 449 aa10.37□□□□□ -0.75
CLK3-205ENST00000561673 CSPG4P5Q96PW8 444 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms