RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 DAPK3O43293 454 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 RARAP10276 462 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 GM2AP17900 193 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 RABIFP47224 123 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 SLC10A7Q0GE19 358 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 MMRN1Q13201 1228 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 WSCD2Q2TBF2 565 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 DEFB133Q30KQ1 61 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 FAM182AQ5T1J6 154 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 POLNQ7Z5Q5 900 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 PARGQ86W56 976 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 PGBD5Q8N414 524 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 CXorf40AQ8TE69 158 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 NCAPGQ9BPX3 1015 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 NENFQ9UMX5 172 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 PCDHB1Q9Y5F3 818 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 KNTC1P50748 2209 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 ZFYVE26Q68DK2 2539 aa17.9■□□□□ 0.46
HDDC3-205ENST00000559898 A0A1W2PQJ5 194 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 A8MX80 341 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 TLX3O43711 291 aaPredicted RBP17.89■□□□□ 0.45
HDDC3-205ENST00000559898 PALMO75781 387 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 TM7SF2O76062 418 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 PEX11BO96011 259 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 CD48P09326 243 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 C1SP09871 688 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 C6P13671 934 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 JUNDP17535 347 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 HTR7P34969 479 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 DAB2P98082 770 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 SLC25A11Q02978 314 aaKnown RBP17.89■□□□□ 0.45
HDDC3-205ENST00000559898 RAD51Q06609 339 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 RALGDSQ12967 914 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 UGP2Q16851 508 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 COL28A1Q2UY09 1125 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 ZSCAN23Q3MJ62 389 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 ATP13A4Q4VNC1 1196 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 PELI3Q8N2H9 469 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 PLA2G15Q8NCC3 412 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 LMX1AQ8TE12 382 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 LRRN4Q8WUT4 740 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 ASB12Q8WXK4 309 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 CLPBQ9H078 707 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 NLGN3Q9NZ94 848 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 IPO11Q9UI26 975 aaKnown RBP17.89■□□□□ 0.45
HDDC3-205ENST00000559898 CAPN11Q9UMQ6 739 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 LHX6Q9UPM6 363 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 SCINQ9Y6U3 715 aa17.89■□□□□ 0.45
HDDC3-205ENST00000559898 RIOK3O14730 519 aaKnown RBP17.88■□□□□ 0.45
HDDC3-205ENST00000559898 CKMT1AP12532 417 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 CASP14P31944 242 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 MMP12P39900 470 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 LIG3P49916 1009 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 DPYSL2Q16555 572 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 PPP1R2P3Q6NXS1 205 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 CRTC1Q6UUV9 634 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 PDCD7Q8N8D1 485 aaKnown RBP17.88■□□□□ 0.45
HDDC3-205ENST00000559898 DENND6BQ8NEG7 585 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 IFT43Q96FT9 208 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 CSPG4P5Q96PW8 444 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 NUP85Q9BW27 656 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 PACSIN1Q9BY11 444 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 XPO4Q9C0E2 1151 aaKnown RBP17.88■□□□□ 0.45
HDDC3-205ENST00000559898 SP110Q9HB58 689 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 PCDH18Q9HCL0 1135 aa17.88■□□□□ 0.45
HDDC3-205ENST00000559898 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.88■□□□□ 0.45
HDDC3-205ENST00000559898 A0A0U1RQS6 177 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 TRAFD1O14545 582 aaPredicted RBP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 AQP9O43315 295 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 SERPING1P05155 500 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 CYP1A2P05177 515 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 MYBL1P10243 752 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 IL4RP24394 825 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 PCK1P35558 622 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 EIF4A3P38919 411 aaKnown RBP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 HCAR3P49019 387 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 HNRNPKP61978 463 aaKnown RBP eCLIP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 ZBED6P86452 979 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 IL10RBQ08334 325 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 NFKBIBQ15653 356 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 CDKN3Q16667 212 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 GUSBP11Q6P575 273 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 DCP2Q8IU60 420 aaKnown RBP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 PHACTR4Q8IZ21 702 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 RFFLQ8WZ73 363 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 TSACCQ96A04 125 aaPredicted RBP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 SMIM14Q96QK8 99 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 LRRC61Q9BV99 259 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 CINPQ9BW66 212 aaPredicted RBP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 DKK4Q9UBT3 224 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 ANAPC7Q9UJX3 599 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 OR1A2Q9Y585 309 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 RP1P56715 2156 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 URB1O60287 2271 aaKnown RBP17.87■□□□□ 0.45
HDDC3-205ENST00000559898 ACACAQ13085 2346 aa17.87■□□□□ 0.45
HDDC3-205ENST00000559898 OPA1O60313 960 aa17.86■□□□□ 0.45
HDDC3-205ENST00000559898 MAP3K6O95382 1288 aa17.86■□□□□ 0.45
HDDC3-205ENST00000559898 MT-CO3P00414 261 aa17.86■□□□□ 0.45
HDDC3-205ENST00000559898 PCCBP05166 539 aa17.86■□□□□ 0.45
HDDC3-205ENST00000559898 DESP17661 470 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms