RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CHKBQ9Y259 395 aa9.7□□□□□ -0.86
CUX1-216ENST00000558469 V9GYY5 206 aaPredicted RBP9.7□□□□□ -0.86
CUX1-216ENST00000558469 A0A0C4DFX4 3053 aa9.7□□□□□ -0.86
CUX1-216ENST00000558469 TCRBV21S2A2A0A5A6 115 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 C1QTNF3-AMACRE9PGA6 284 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 GOLGA8MH3BSY2 632 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 TRAFD1O14545 582 aaPredicted RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 SOCS5O75159 536 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 USP12O75317 370 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 SEC31AO94979 1220 aaKnown RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 SLC34A2O95436 690 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 PDHA1P08559 390 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 ITIH2P19823 946 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 TPSB2P20231 275 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 DGKEP52429 567 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 METAP1P53582 386 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 ITGA8P53708 1063 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 SATB1Q01826 763 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 CDK18Q07002 472 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 MTAPQ13126 283 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 CALCOCO2Q13137 446 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 KCNJ11Q14654 390 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 TPSAB1Q15661 275 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 CFAP58Q5T655 872 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 RNASEH2BQ5TBB1 312 aaKnown RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 ANKRD22Q5VYY1 191 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 ZNF776Q68DI1 518 aaPredicted RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 TMPRSS6Q8IU80 811 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 SPEM1Q8N4L4 309 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 SLC25A41Q8N5S1 370 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 BBOF1Q8ND07 529 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 IFT81Q8WYA0 676 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 UBXN4Q92575 508 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 FEM1CQ96JP0 617 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 APOL2Q9BQE5 337 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 TDRD1Q9BXT4 1180 aaKnown RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 OSBPL1AQ9BXW6 950 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 MKRN2Q9H000 416 aaKnown RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 EPC1Q9H2F5 836 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 CHRDQ9H2X0 955 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 FBRSQ9HAH7 460 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 CD248Q9HCU0 757 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 POLMQ9NP87 494 aaPredicted RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 EIF2B3Q9NR50 452 aaKnown RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 WHRNQ9P202 907 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 SCN8AQ9UQD0 1980 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 ARIH1Q9Y4X5 557 aaPredicted RBP9.69□□□□□ -0.86
CUX1-216ENST00000558469 PCDHB9Q9Y5E1 797 aa9.69□□□□□ -0.86
CUX1-216ENST00000558469 LOC285095A0A1B0GVY8 99 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 C16orf96A6NNT2 1141 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 BHMG1C9JSJ3 638 aaPredicted RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 PLK4O00444 970 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 MID1O15344 667 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 HTRA2O43464 458 aaPredicted RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 TMEM63AO94886 807 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 SUN1O94901 812 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PGLSO95336 258 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ADH1BP00325 375 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 CPP00450 1065 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PRLP01236 227 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 GABRG2P18507 467 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 AOC1P19801 751 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ITGB7P26010 798 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 SLC8A1P32418 973 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ADRA1AP35348 466 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 MAGEA6P43360 314 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 MAGEA9P43362 315 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 CHRNA4P43681 627 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 EPHB1P54762 984 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 DRG2P55039 364 aaKnown RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 RPS14P62263 151 aaKnown RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 SARNPP82979 210 aaKnown RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 CDK16Q00536 496 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 GALNT3Q14435 633 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 MORF4L2Q15014 288 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 SLC1A5Q15758 541 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 CST6Q15828 149 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ERCC6LQ2NKX8 1250 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ZNF805Q5CZA5 627 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 SIRPB2Q5JXA9 342 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ARMC12Q5T9G4 340 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 FAM46CQ5VWP2 391 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 NAPEPLDQ6IQ20 393 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 HIBCHQ6NVY1 386 aaPredicted RBP9.68□□□□□ -0.86
CUX1-216ENST00000558469 RANBP10Q6VN20 620 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PPP1R21Q6ZMI0 780 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 LINC00523Q86TU6 105 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 TTC7BQ86TV6 843 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 HOOK3Q86VS8 718 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 ZSWIM9Q86XI8 627 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 KLHDC8BQ8IXV7 354 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 IFT20Q8IY31 132 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PGBD3Q8N328 593 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 NAT8LQ8N9F0 302 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 DNAAF3Q8N9W5 541 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 LPCAT1Q8NF37 534 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 OR52K1Q8NGK4 314 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 HMGB4Q8WW32 186 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 PIH1D2Q8WWB5 315 aa9.68□□□□□ -0.86
CUX1-216ENST00000558469 SEC14L1Q92503 715 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms