RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 USP33Q8TEY7 942 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 BORCS5Q969J3 196 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 UHRF1Q96T88 793 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TBCBQ99426 244 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 C11orf84Q9BUA3 381 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 HERC2P3Q9BVR0 1158 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 UNC93B1Q9H1C4 597 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 C2orf40Q9H1Z8 148 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CDT1Q9H211 546 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 FAM96AQ9H5X1 160 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 EPS8L2Q9H6S3 715 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM134Q9H6X4 195 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 NANOGQ9H9S0 305 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TLR9Q9NR96 1032 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SUCOQ9UBS9 1254 aaKnown RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CITO14578 2027 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 A0A087WXM4 84 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 HEATR9A2RTY3 570 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 UBFD1O14562 309 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 B4GALT4O60513 344 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FARP2O94887 1054 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AHSGP02765 367 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 HSPA1AP0DMV8 641 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 HSPA1BP0DMV9 641 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MCF2P10911 925 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NCK1P16333 377 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PROZP22891 400 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CD68P34810 354 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 OPRL1P41146 370 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SLC6A3Q01959 620 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FPGSQ05932 587 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AQP6Q13520 282 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 DNASE1L3Q13609 305 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TTLL4Q14679 1199 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZIK1Q3SY52 487 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 UGT3A2Q3SY77 523 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SLC36A3Q495N2 470 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CYBRD1Q53TN4 286 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ANKRD34AQ69YU3 496 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FAM117BQ6P1L5 589 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 LCLAT1Q6UWP7 414 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PID1Q7Z2X4 250 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 KDELC2Q7Z4H8 507 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CTU1Q7Z7A3 348 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 DSG4Q86SJ6 1040 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM135Q86UB9 458 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CNTD1Q8N815 330 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SMG8Q8ND04 991 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 DNERQ8NFT8 737 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 GABPB2Q8TAK5 448 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ADAMTS16Q8TE57 1224 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 STYXQ8WUJ0 223 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF419Q96HQ0 510 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MAELQ96JY0 434 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CAMKK2Q96RR4 588 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MLPHQ9BV36 600 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ALOXE3Q9BYJ1 711 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 POLE4Q9NR33 117 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 GTSE1Q9NYZ3 720 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM181Q9P2C4 612 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MAP10Q9P2G4 905 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 POU2F3Q9UKI9 436 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 VANGL2Q9ULK5 521 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TCAF1Q9Y4C2 921 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TRIM64BA6NI03 449 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NFKBIEO00221 500 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZBTB24O43167 697 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 XYLBO75191 536 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ALDOCP09972 364 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CYP2C8P10632 490 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 VDRP11473 427 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 BMP2P12643 396 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MLNP12872 115 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 IDO1P14902 403 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 MYF6P23409 242 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SPRP35270 261 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ARL4AP40617 200 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PRKAA1Q13131 559 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 FASTKQ14296 549 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 USP10Q14694 798 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PLA2G4EQ3MJ16 856 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PKDCCQ504Y2 493 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZNF789Q5FWF6 425 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PRR23BQ6ZRT6 265 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ERMP1Q7Z2K6 904 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 KCNMB4Q86W47 210 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ZC3HC1Q86WB0 502 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PARP8Q8N3A8 854 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 PAF1Q8N7H5 531 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 ANKFN1Q8N957 763 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 CHST13Q8NET6 341 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 REPS2Q8NFH8 660 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SLC35F5Q8WV83 523 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 AFG1LQ8WV93 481 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SNX19Q92543 992 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 GFM2Q969S9 779 aaKnown RBP4.89□□□□□ -1.63
LIMA1-214ENST00000552783 TAMM41Q96BW9 452 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 KLRG1Q96E93 195 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 NT5C1AQ9BXI3 368 aa4.89□□□□□ -1.63
LIMA1-214ENST00000552783 SNX25Q9H3E2 840 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms