RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 HAPLN2Q9GZV7 340 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 C11orf54Q9H0W9 315 aaPredicted RBP6.41□□□□□ -1.38
VPS29-210ENST00000552130 OSGEPL1Q9H4B0 414 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 TMEM206Q9H813 350 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 FBRSL1Q9HCM7 1045 aaKnown RBP6.41□□□□□ -1.38
VPS29-210ENST00000552130 TMOD3Q9NYL9 352 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 STX8Q9UNK0 236 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 SLC8A2Q9UPR5 921 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 TDRKHQ9Y2W6 561 aaKnown RBP6.41□□□□□ -1.38
VPS29-210ENST00000552130 IL16Q14005 1332 aa6.41□□□□□ -1.38
VPS29-210ENST00000552130 ANXA2P2A6NMY6 339 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 CCDC188H7C350 402 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 PPEF2O14830 753 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ZC3H11AO75152 810 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS29-210ENST00000552130 AKAP3O75969 853 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 RASAL1O95294 804 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 MT-ATP6P00846 226 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 CYP1A2P05177 515 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 S100A9P06702 114 aaKnown RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 PIM1P11309 404 aaPredicted RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 CHN1P15882 459 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 FAHP16930 419 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 EPORP19235 508 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 TRIM21P19474 475 aaKnown RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 GALP22466 123 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 SOAT1P35610 550 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 TAGLN2P37802 199 aaKnown RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 EPS15P42566 896 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 FASLGP48023 281 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ACY1Q03154 408 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ABHD18Q0P651 414 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 CCDC142Q17RM4 750 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ASTE1Q2TB18 679 aaPredicted RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 LRRC23Q53EV4 343 aaPredicted RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 IGSF11Q5DX21 431 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 SEM1Q6ZVN7 128 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ATG9AQ7Z3C6 839 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 BNIPLQ7Z465 357 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 SPRED1Q7Z699 444 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 IQCHQ86VS3 1027 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 GAS2L3Q86XJ1 694 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 PLXDC1Q8IUK5 500 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 CCDC13Q8IYE1 715 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 MMP21Q8N119 569 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 RASGEF1CQ8N431 466 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ARL14Q8N4G2 192 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 NIPA2Q8N8Q9 360 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 FAM133AQ8N9E0 248 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 FBXO18Q8NFZ0 1043 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 CADM4Q8NFZ8 388 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ABHD5Q8WTS1 349 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 RNFT2Q96EX2 444 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 NRBF2Q96F24 287 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 FBXL20Q96IG2 436 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 SAMD8Q96LT4 415 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 CAMK1GQ96NX5 476 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 SYT3Q9BQG1 590 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 SPATA5L1Q9BVQ7 753 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS29-210ENST00000552130 NGBQ9NPG2 151 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 RPRD1BQ9NQG5 326 aaKnown RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 PRMT8Q9NR22 394 aaPredicted RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 ARHGEF38Q9NXL2 777 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 GDAP2Q9NXN4 497 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS29-210ENST00000552130 ANKMY1Q9P2S6 941 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 ZBTB1Q9Y2K1 713 aa6.4□□□□□ -1.38
VPS29-210ENST00000552130 STRAPQ9Y3F4 350 aaKnown RBP6.4□□□□□ -1.38
VPS29-210ENST00000552130 GOLGA6L7A0A1B0GV03 622 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 TCRBV5S2A0A599 114 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 MROH6A6NGR9 719 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 ZNF785A8K8V0 405 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 KDM4EB2RXH2 506 aaPredicted RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 M0QYG6 137 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 POLR2DO15514 142 aaKnown RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 BUB1O43683 1085 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 NUDT21O43809 227 aaKnown RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 PAGE4O60829 102 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 IPO7O95373 1038 aaKnown RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 NTRK1P04629 796 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 CD19P15391 556 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 ZNF8P17098 575 aaPredicted RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 JAK1P23458 1154 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 DNAJB1P25685 340 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 CTNNB1P35222 781 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 GDF5P43026 501 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 PDE1AP54750 535 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 TIRAPP58753 221 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 SLFN5Q08AF3 891 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 GOLGA8FQ08AF8 430 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 CSTF3Q12996 717 aaKnown RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 TRDNQ13061 729 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 PLD1Q13393 1074 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 RAPSNQ13702 412 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 NEDD9Q14511 834 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 EFTUD2Q15029 972 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS29-210ENST00000552130 TAZQ16635 292 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 HADHQ16836 314 aaKnown RBP6.39□□□□□ -1.39
VPS29-210ENST00000552130 AAK1Q2M2I8 961 aa6.39□□□□□ -1.39
VPS29-210ENST00000552130 CFAP221Q4G0U5 840 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms