RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 LOXL4Q96JB6 756 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 FEM1CQ96JP0 617 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 FCRL5Q96RD9 977 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 TMEM121Q9BTD3 319 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ADGRE3Q9BY15 652 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 CD93Q9NPY3 652 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 SERGEFQ9UGK8 458 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 RSPH14Q9UHP6 348 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 PHTF1Q9UMS5 762 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 PCDHB9Q9Y5E1 797 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 RAI2Q9Y5P3 530 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 TSPAN11A1L157 253 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GOLGA6CA6NDK9 693 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GOLGA6BA6NDN3 693 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 METTL12A8MUP2 240 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 PLK4O00444 970 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 ZNF185O15231 689 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 TSPAN6O43657 245 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 AP1G1O43747 822 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GCATO75600 419 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GJB3O75712 270 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 ANXA9O76027 345 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 PCDH8O95206 1070 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GOLGA6DP0CG33 693 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 BCKDHBP21953 392 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 DPP6P42658 865 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 DHPSP49366 369 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 EPHB1P54762 984 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 ADPRHP54922 357 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 RPL26P61254 145 aaKnown RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 SKOR1P84550 965 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 SIX1Q15475 284 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 WDR45BQ5MNZ6 344 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 PMS2CLQ68D20 193 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 C4orf22Q6V702 233 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 ARHGEF18Q6ZSZ5 1173 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GSTA5Q7RTV2 222 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 TMEFF1Q8IYR6 380 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 ATL2Q8NHH9 583 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 SPOCK2Q92563 424 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 MAGOHBQ96A72 148 aaKnown RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 IFT43Q96FT9 208 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 SPATA13Q96N96 652 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 RBM15Q96T37 977 aaKnown RBP eCLIP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 VPS45Q9NRW7 570 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 GOLGA6AQ9NYA3 693 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 FAM153AQ9UHL3 310 aa13.88□□□□□ -0.19
PTCH1-213ENST00000546820 RPL26L1Q9UNX3 145 aaKnown RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 AAR2Q9Y312 384 aaKnown RBP13.88□□□□□ -0.19
PTCH1-213ENST00000546820 PRR23AA6NEV1 266 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 UPK3BL1B0FP48 263 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 UPK3BL2E5RIL1 263 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PSMD3O43242 534 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PGLSO95336 258 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 CPP00450 1065 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 LMNAP02545 664 aaKnown RBP13.87□□□□□ -0.19
PTCH1-213ENST00000546820 NFKB1P19838 968 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 NUDT1P36639 197 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 CCR5P51681 352 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 TRAF2Q12933 501 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 MPP3Q13368 585 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 OASLQ15646 514 aaKnown RBP13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PARP6Q2NL67 630 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 P3H1Q32P28 736 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 KIAA0895LQ68EN5 471 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 LAIR1Q6GTX8 287 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 NYAP1Q6ZVC0 841 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PRPF39Q86UA1 669 aaKnown RBP13.87□□□□□ -0.19
PTCH1-213ENST00000546820 RGL4Q8IZJ4 473 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 DEFB119Q8N690 84 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PRELID2Q8N945 189 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 CCDC89Q8N998 374 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 CCDC110Q8TBZ0 833 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 VOPP1Q96AW1 172 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 C16orf45Q96MC5 204 aaPredicted RBP13.87□□□□□ -0.19
PTCH1-213ENST00000546820 AP1M1Q9BXS5 423 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 GBA3Q9H227 469 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PCDH9Q9HC56 1237 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 FAM86C1Q9NVL1 165 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 FADS3Q9Y5Q0 445 aa13.87□□□□□ -0.19
PTCH1-213ENST00000546820 PLXND1Q9Y4D7 1925 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 EML5Q05BV3 1969 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 MEI4A8MW99 385 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 RIOK3O14730 519 aaKnown RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 RNGTTO60942 597 aaKnown RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 FSBPO95073 299 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 IFNB1P01574 187 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 EPOP01588 193 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 MMP2P08253 660 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 HOXD11P31277 338 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 CD68P34810 354 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 GEMP55040 296 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 TAS2R38P59533 333 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 RPS21P63220 83 aaKnown RBP13.86□□□□□ -0.19
PTCH1-213ENST00000546820 FAM193AP78312 1265 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 NHLH1Q02575 133 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 CDK18Q07002 472 aa13.86□□□□□ -0.19
PTCH1-213ENST00000546820 SGCGQ13326 291 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms