RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 MAMSTRQ6ZN01 415 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 NLRP9Q7RTR0 991 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 CNPY4Q8N129 248 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 SIX5Q8N196 739 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 OR2T3Q8NH03 318 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 IFT81Q8WYA0 676 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 RAB7BQ96AH8 199 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 CLDN23Q96B33 292 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 LYSMD1Q96S90 227 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 RSPH9Q9H1X1 276 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 CACNA2D2Q9NY47 1150 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 EVLQ9UI08 416 aaPredicted RBP16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 RIMKLBQ9ULI2 386 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 PPM1HQ9ULR3 514 aa16.15■□□□□ 0.18
PRPF40A-212ENST00000545856 ANKRD66B4E2M5 251 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 HOXB2P14652 356 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 TSHRP16473 764 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 ECHS1P30084 290 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 CARSP49589 748 aaKnown RBP16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 DGKEP52429 567 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 MRPS25P82663 173 aaKnown RBP16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 ELF2Q15723 593 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 FAXCQ5TGI0 409 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 ZNF776Q68DI1 518 aaPredicted RBP16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 SYT13Q7L8C5 426 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 EDAQ92838 391 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 RANBP9Q96S59 729 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 PARD6BQ9BYG5 372 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 ZDHHC6Q9H6R6 413 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 MRM3Q9HC36 420 aaKnown RBP16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 PRSS16Q9NQE7 514 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 ARGLU1Q9NWB6 273 aaPredicted RBP16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 MUTYHQ9UIF7 546 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 TRIOO75962 3097 aa16.14■□□□□ 0.17
PRPF40A-212ENST00000545856 DCXO43602 365 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 SPAG6O75602 509 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 KLF8O95600 359 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 CPP00450 1065 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 ATXN1LP0C7T5 689 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 C5AR1P21730 350 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TARSP26639 723 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 VSNL1P62760 191 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TRAF2Q12933 501 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 C2orf27AQ580R0 203 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 IER5LQ5T953 404 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 ANKRD22Q5VYY1 191 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 ZNF534Q76KX8 674 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 CAND1Q86VP6 1230 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 DNAAF3Q8N9W5 541 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TXNDC5Q8NBS9 432 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 PJA1Q8NG27 643 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 HNRNPLLQ8WVV9 542 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TTC25Q96NG3 672 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 MCCC1Q96RQ3 725 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 UHRF1Q96T88 793 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 FICDQ9BVA6 458 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 HDAC8Q9BY41 377 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 CHRDQ9H2X0 955 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TBC1D17Q9HA65 648 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 MAGEE1Q9HCI5 957 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 POLMQ9NP87 494 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 DYRK4Q9NR20 520 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 NFU1Q9UMS0 254 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 NDRG2Q9UN36 371 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 SDR42E2A6NKP2 422 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 SLC7A4O43246 635 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 LEFTY1O75610 366 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 PAPSS2O95340 614 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TTC4O95801 387 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 GSTA2P09210 222 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 NUMBP49757 651 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 EPHB1P54762 984 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 SEC13P55735 322 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 ELP6Q0PNE2 266 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 TTC31Q49AM3 519 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 USP45Q70EL2 814 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 KBTBD6Q86V97 674 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 CAMK1DQ8IU85 385 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 SFTPA1Q8IWL2 248 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 RPLP0P6Q8NHW5 317 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 PIP4K2CQ8TBX8 421 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 VOPP1Q96AW1 172 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 SCRN2Q96FV2 425 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 FAM129BQ96TA1 746 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 ACOX2Q99424 681 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 LMAN1LQ9HAT1 526 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 UBP1Q9NZI7 540 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 PCDHB9Q9Y5E1 797 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 PCDHGC4Q9Y5F7 938 aa16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 V9GYY5 206 aaPredicted RBP16.13■□□□□ 0.17
PRPF40A-212ENST00000545856 ZNF106Q9H2Y7 1883 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 A0A0J9YYE9 177 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 A0A1W2PQF6 199 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 TCRBV7S3A2A0A539 114 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 HEATR9A2RTY3 570 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 FAM170BA6NMN3 283 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 ADAM23O75077 832 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 ALDH1A2O94788 518 aa16.12■□□□□ 0.17
PRPF40A-212ENST00000545856 CRTAMO95727 393 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms