RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ENPP7Q6UWV6 458 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CENPQQ7L2Z9 268 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SPRED1Q7Z699 444 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 BTLAQ7Z6A9 289 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 TAF8Q7Z7C8 310 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 TMEM135Q86UB9 458 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SLITRK4Q8IW52 837 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF295-AS1Q8N0V1 137 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NLGN4XQ8N0W4 816 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 MMP21Q8N119 569 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CCAR2Q8N163 923 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 FSTL5Q8N475 847 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 PDILTQ8N807 584 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC112Q8NEF3 446 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 FAM46DQ8NEK8 389 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NLGN4YQ8NFZ3 816 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 OR6C4Q8NGE1 309 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 PARD3BQ8TEW8 1205 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 STARD8Q92502 1023 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC74BQ96LY2 380 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC114Q96M63 670 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 CLIC6Q96NY7 704 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NUDT22Q9BRQ3 303 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 EFHD1Q9BUP0 239 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SLC29A3Q9BZD2 475 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 EDEM3Q9BZQ6 932 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 UBXN6Q9BZV1 441 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 IMPG2Q9BZV3 1241 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 DPEP2Q9H4A9 486 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SUDS3Q9H7L9 328 aaPredicted RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SLAMF7Q9NQ25 335 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 OCIAD1Q9NX40 245 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 IL36AQ9UHA7 158 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 XPO7Q9UIA9 1087 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 MOSPD1Q9UJG1 213 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 VPS28Q9UK41 221 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 LIMCH1Q9UPQ0 1083 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 NAALADL1Q9UQQ1 740 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SLC5A6Q9Y289 635 aa4.85□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF106Q9H2Y7 1883 aaKnown RBP4.85□□□□□ -1.63
LIMS1-214ENST00000542845 SYNJ2BP-COX16A0A087WUM0 186 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 IGHV5-10-1A0A0J9YXX1 117 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CDC14CA4D256 554 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 A6NCN8 305 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RHPN2P1A8MT19 583 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 PRSS44E7EML9 344 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 F5H5T6 163 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 B4GAT1O43505 415 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 SMAD6O43541 496 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 KRT86O43790 486 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 EIF5BO60841 1220 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 MMP20O60882 483 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 LEFTY1O75610 366 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RFPL1O75677 317 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RASGRP1O95267 797 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CPNE6O95741 557 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 MT-CO1P00395 513 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ASS1P00966 412 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 PRNPP04156 253 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RPN1P04843 607 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 FURINP09958 794 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 SRCP12931 536 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ADRB3P13945 408 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CD19P15391 556 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 GLB1P16278 677 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RRM1P23921 792 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ITGB7P26010 798 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 MAP4P27816 1152 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 LEPRP48357 1165 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RNF144AP50876 292 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 BLKP51451 505 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CCL11P51671 97 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 HK3P52790 923 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 PFN3P60673 137 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CEBPZQ03701 1054 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 SLC12A1Q13621 1099 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TTC39BQ5VTQ0 682 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 NKAIN2Q5VXU1 208 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 NXPE4Q6UWF7 544 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 LINGO4Q6UY18 593 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 BHLHA9Q7RTU4 235 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 RYBPQ8N488 228 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 SH2D3CQ8N5H7 860 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ANKRD52Q8NB46 1076 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CCDC150Q8NCX0 1101 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TMIEQ8NEW7 156 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 OR2A12Q8NGT7 310 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF507Q8TCN5 953 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 CLEC4CQ8WTT0 213 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TAF4BQ92750 862 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 AZIN2Q96A70 460 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 C19orf60Q96EN9 201 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 PPP1R16AQ96I34 528 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 FCRL2Q96LA5 508 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 KLF6Q99612 283 aaPredicted RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 FEM1AQ9BSK4 669 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 SRRTQ9BXP5 876 aaKnown RBP4.84□□□□□ -1.63
LIMS1-214ENST00000542845 ASPSCR1Q9BZE9 553 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 GRIP2Q9C0E4 1043 aa4.84□□□□□ -1.63
LIMS1-214ENST00000542845 TWSG1Q9GZX9 223 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms