RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PGBD5Q8N414 524 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 TOP1MTQ969P6 601 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 CEP295NLQ96MC4 621 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 RPRD1AQ96P16 312 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-210ENST00000538120 C20orf27Q9GZN8 174 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 ATXN3LQ9H3M9 355 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 ATP13A1Q9HD20 1204 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 NT5MQ9NPB1 228 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 ENTPD7Q9NQZ7 604 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 AFF4Q9UHB7 1163 aaKnown RBP10.85□□□□□ -0.67
CLIP1-210ENST00000538120 SCOCQ9UIL1 159 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 HBS1LQ9Y450 684 aaKnown RBP10.85□□□□□ -0.67
CLIP1-210ENST00000538120 MICAL3Q7RTP6 2002 aa10.85□□□□□ -0.67
CLIP1-210ENST00000538120 TTC24A2A3L6 582 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 BIRC5O15392 142 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 PLIN3O60664 434 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SPRP35270 261 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ARCN1P48444 511 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 CSRP3P50461 194 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 RENBPP51606 427 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 MAXP61244 160 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 PDE1BQ01064 536 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 MSLNQ13421 630 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SERINC3Q13530 473 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ESRP1Q6NXG1 681 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 KDELC2Q7Z4H8 507 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 NUDCD3Q8IVD9 361 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ARID3BQ8IVW6 561 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 GALNT15Q8N3T1 639 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 E2F7Q96AV8 911 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TADA1Q96BN2 335 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 PPP1R2P1Q96PQ5 205 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 PANX3Q96QZ0 392 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ARPC5LQ9BPX5 153 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 BEGAINQ9BUH8 593 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 VCXQ9H320 206 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 RC3H2Q9HBD1 1191 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SNX15Q9NRS6 342 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TXNDC16Q9P2K2 825 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SLC2A6Q9UGQ3 507 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TCAF1Q9Y4C2 921 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 A0A1B0GVG6 124 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 CAPN14A8MX76 684 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 GLRA3O75311 464 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SNNO75324 88 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SOD2P04179 222 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ITGB8P26012 769 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 GABRB3P28472 473 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TYK2P29597 1187 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ATP5C1P36542 298 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 KPNA1P52294 538 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 CSE1LP55060 971 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 IRX4P78413 519 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 DSC2Q02487 901 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 MPP3Q13368 585 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 POLD3Q15054 466 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 CHI3L2Q15782 390 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ACBD5Q5T8D3 534 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 MARC1Q5VT66 337 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 SLC39A11Q8N1S5 342 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 CFAP52Q8N1V2 620 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 PLD6Q8N2A8 252 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF461Q8TAF7 563 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ARRDC2Q8TBH0 407 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 PABPC5Q96DU9 382 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ATXN7L3BQ96GX2 97 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF184Q99676 751 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TUBB6Q9BUF5 446 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 CAB39LQ9H9S4 337 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ARNT2Q9HBZ2 717 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 MRM3Q9HC36 420 aaKnown RBP10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TREX1Q9NSU2 369 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ZNF358Q9NW07 568 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 TMEM216Q9P0N5 145 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 DCDC2Q9UHG0 476 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 DNMT3LQ9UJW3 386 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 ATP11BQ9Y2G3 1177 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 DOCK4Q8N1I0 1966 aa10.84□□□□□ -0.67
CLIP1-210ENST00000538120 E2F8A0AVK6 867 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 H3BNC9 293 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 COCHO43405 550 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 ACSL4O60488 711 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 RAMP2O60895 175 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 PROCP04070 461 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 DEFB103AP81534 67 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 ROR2Q01974 943 aaKnown RBP10.83□□□□□ -0.68
CLIP1-210ENST00000538120 DSG1Q02413 1049 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 IL10RBQ08334 325 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 DLG2Q15700 870 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 INSCQ1MX18 579 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 PARP15Q460N3 678 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 FASTKD1Q53R41 847 aaKnown RBP10.83□□□□□ -0.68
CLIP1-210ENST00000538120 PDPK2PQ6A1A2 396 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 KIAA1841Q6NSI8 718 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 RIPOR1Q6ZS17 1223 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 TRIM42Q8IWZ5 723 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 LGI2Q8N0V4 545 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 PPFIBP2Q8ND30 876 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 OR52K2Q8NGK3 314 aa10.83□□□□□ -0.68
CLIP1-210ENST00000538120 OVCA2Q8WZ82 227 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms