RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 LIN7AO14910 233 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-209ENST00000537178 OR10H2O60403 315 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 PRKAR1AP10644 381 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 ZNF37AP17032 561 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-209ENST00000537178 FGFR3P22607 806 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 RAB2AP61019 212 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 CBFBQ13951 182 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 ARCQ7LC44 396 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 DEFB128Q7Z7B8 93 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 ADGRG2Q8IZP9 1017 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 DSELQ8IZU8 1212 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 PGLYRP2Q96PD5 576 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLIP1-209ENST00000537178 RAPGEFL1Q9UHV5 662 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 GMEB1Q9Y692 573 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 ABCA3Q99758 1704 aa10.71□□□□□ -0.69
CLIP1-209ENST00000537178 VIL1P09327 827 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 KDELR1P24390 212 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 UGT1A5P35504 534 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 ATP5C1P36542 298 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 FAM171BQ6P995 826 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 TRIM40Q6P9F5 258 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 NIPA1Q7RTP0 329 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 ADAMTSL2Q86TH1 951 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 GPR180Q86V85 440 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 DNAJB3Q8WWF6 145 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 NELL1Q92832 810 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 PRMT6Q96LA8 375 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 ULBP1Q9BZM6 244 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 SLC39A8Q9C0K1 460 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 SPATC1LQ9H0A9 340 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 ZNF222Q9UK12 451 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 SLC28A1O00337 649 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 SNX3O60493 162 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 GCATO75600 419 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 LDOC1O95751 146 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 COX4I1P13073 169 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 DPEP1P16444 411 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 GSTT1P30711 240 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 FAUP35544 74 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 ELF3P78545 371 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 PPATQ06203 517 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 ZIK1Q3SY52 487 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 PERM1Q5SV97 790 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 NOL9Q5SY16 702 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 SWT1Q5T5J6 900 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 UNC93AQ86WB7 457 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 RP9Q8TA86 221 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 PSMA8Q8TAA3 256 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 MTFMTQ96DP5 389 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 TEFMQ96QE5 360 aaKnown RBP10.71□□□□□ -0.7
CLIP1-209ENST00000537178 CAB39LQ9H9S4 337 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 COMMD3-BMI1R4GMX3 469 aa10.71□□□□□ -0.7
CLIP1-209ENST00000537178 SRRM3A6NNA2 597 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 E5RJQ4 531 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 HDAC3O15379 428 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PSIP1O75475 530 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 UNC5CO95185 931 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 CDK9P50750 372 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PDK3Q15120 406 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PTGES3Q15185 160 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 GPAT3Q53EU6 434 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 LRRC38Q5VT99 294 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 BICRALQ6AI39 1079 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 MARK2Q7KZI7 788 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 IFNLR1Q8IU57 520 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 CXorf40BQ96DE9 158 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 CERS2Q96G23 380 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 C1QTNF1Q9BXJ1 281 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PNPLA3Q9NST1 481 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 SOHLH2Q9NX45 425 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 BTN3A3O00478 584 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 OR10H3O60404 316 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 KHDRBS3O75525 346 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 TSPAN9O75954 239 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 FAM153BP0C7A2 387 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 TFEBP19484 476 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 ACTR3P61158 418 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 MYBPC1Q00872 1141 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 FAM153CQ494X1 144 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 CRELD2Q6UXH1 353 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 UNC5AQ6ZN44 842 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 CXorf40AQ8TE69 158 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PLEKHG4BQ96PX9 1271 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 FNDC11Q9BVV2 318 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 DSN1Q9H410 356 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 ZNF304Q9HCX3 659 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 TMA7Q9Y2S6 64 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 SAMHD1Q9Y3Z3 626 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PPP2R3BQ9Y5P8 575 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 XIRP1Q702N8 1843 aaKnown RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 OTCP00480 354 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 ZNF286BP0CG31 522 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 ADSLP30566 484 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-209ENST00000537178 CBX5P45973 191 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 GALNT3Q14435 633 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 PGBD2Q6P3X8 592 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 GALNT18Q6P9A2 607 aa10.7□□□□□ -0.7
CLIP1-209ENST00000537178 AFTPHQ6ULP2 937 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms