RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 GABPB2Q8TAK5 448 aaPredicted RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 HMCESQ96FZ2 354 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 C1orf74Q96LT6 269 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 KLHL5Q96PQ7 755 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 ZFYVE28Q9HCC9 887 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 ZBTB26Q9HCK0 441 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 CYP4F12Q9HCS2 524 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 ZDHHC7Q9NXF8 308 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 NOD1Q9Y239 953 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 COPG1Q9Y678 874 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 MAP3K13O43283 966 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 GPR15P49685 360 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 THOP1P52888 689 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 AQP4P55087 323 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 NRG1Q02297 640 aaPredicted RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 SLC10A7Q0GE19 358 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 ART3Q13508 389 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 MAP3K21Q5TCX8 1036 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 MARC1Q5VT66 337 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 AGAP9Q5VTM2 703 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 MON1AQ86VX9 555 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PNPLA1Q8N8W4 532 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PHC3Q8NDX5 983 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 IMP4Q96G21 291 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 TUBGCP5Q96RT8 1024 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 OLFM1Q99784 485 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 UPF3AQ9H1J1 476 aaKnown RBP13.26□□□□□ -0.29
LDLR-203ENST00000535915 SP110Q9HB58 689 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 IGSF5Q9NSI5 407 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 PDP2Q9P2J9 529 aa13.26□□□□□ -0.29
LDLR-203ENST00000535915 WASH4PA8MWX3 477 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 PEX11BO96011 259 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 HAPLN1P10915 354 aaPredicted RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 MSX2P35548 267 aaPredicted RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 PKNOX1P55347 436 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 TBX4P57082 545 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 DNAJB13P59910 316 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 FLOT2Q14254 428 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 TECRLQ5HYJ1 363 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 PTAR1Q7Z6K3 402 aaPredicted RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 NUP93Q8N1F7 819 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 UMODL1-AS1Q8N2C9 162 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 STON2Q8WXE9 905 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 USP13Q92995 863 aaPredicted RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 ZYG11BQ9C0D3 744 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 SUDS3Q9H7L9 328 aaPredicted RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 WDR41Q9HAD4 459 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 EFCAB1Q9HAE3 211 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 ARNT2Q9HBZ2 717 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 ASB3Q9Y575 518 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 B4GALT3O60512 393 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 RNASEH1O60930 286 aaKnown RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 CNTN5O94779 1100 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 CCDC166P0CW27 439 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 SLC2A3P11169 496 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 GRK4P32298 578 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 LEPRP48357 1165 aaKnown RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 CLCN5P51795 746 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 NDST2P52849 883 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 DSC2Q02487 901 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 CRHR2Q13324 411 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 MED21Q13503 144 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 KCNA10Q16322 511 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 GRAMD1BQ3KR37 738 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 KLC3Q6P597 504 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 ZNF280BQ86YH2 543 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 PGAM4Q8N0Y7 254 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 RNF148Q8N7C7 305 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 OR6P1Q8NGX9 317 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 CEP70Q8NHQ1 597 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.25□□□□□ -0.29
LDLR-203ENST00000535915 FNIP2Q9P278 1114 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 SCML2Q9UQR0 700 aa13.25□□□□□ -0.29
LDLR-203ENST00000535915 TTC24A2A3L6 582 aaPredicted RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 SDHDO14521 159 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 TADA2AO75478 443 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 LTA4HP09960 611 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 UQCRBP14927 111 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 PLK1P53350 603 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 XIAPP98170 497 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 EFEMP1Q12805 493 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 TRIM32Q13049 653 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 MSLNQ13421 630 aaPredicted RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 HERC3Q15034 1050 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 PSMD5Q16401 504 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 ZNF423Q2M1K9 1284 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 ALFQ53S48 1182 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 PIGGQ5H8A4 983 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 MS4A13Q5J8X5 152 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 DCP1BQ8IZD4 617 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 PSMG2Q969U7 264 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 CCDC126Q96EE4 140 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 IFT43Q96FT9 208 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 TSPAN17Q96FV3 270 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 SLC39A13Q96H72 371 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 TRMT13Q9NUP7 481 aaKnown RBP13.24□□□□□ -0.29
LDLR-203ENST00000535915 FRMPD3Q5JV73 1810 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 A8MT66 165 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 CCL22O00626 93 aa13.24□□□□□ -0.29
LDLR-203ENST00000535915 SEPT4O43236 478 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms