RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 HNRNPA1L2Q32P51 320 aaKnown RBP8.65□□□□□ -1.02
SSBP3-212ENST00000528930 C9orf64Q5T6V5 341 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 SFMBT2Q5VUG0 894 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 CDCP2Q5VXM1 449 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 KIAA1324Q6UXG2 1013 aaKnown RBP8.65□□□□□ -1.02
SSBP3-212ENST00000528930 STRADAQ7RTN6 431 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 ZNF571Q7Z3V5 609 aaPredicted RBP8.65□□□□□ -1.02
SSBP3-212ENST00000528930 FAM131BQ86XD5 332 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 DNAAF5Q86Y56 855 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 GATAD2AQ86YP4 633 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 MCOLN2Q8IZK6 566 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 Q8N3U1 123 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 PRCCQ92733 491 aaPredicted RBP8.65□□□□□ -1.02
SSBP3-212ENST00000528930 PTPRN2Q92932 1015 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 RPL10LQ96L21 214 aaKnown RBP8.65□□□□□ -1.02
SSBP3-212ENST00000528930 FEM1AQ9BSK4 669 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 SELENOOQ9BVL4 669 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 GPR174Q9BXC1 333 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 MAGEB5Q9BZ81 275 aa8.65□□□□□ -1.02
SSBP3-212ENST00000528930 SEPT11Q9NVA2 429 aaKnown RBP8.65□□□□□ -1.02
SSBP3-212ENST00000528930 SHANK1Q9Y566 2161 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 A0A1W2PQJ5 194 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 TARSL2A2RTX5 802 aaKnown RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 CDRT15L2A8MXV6 281 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FAM72CH0Y354 149 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 GOLGA6L19H0YKK7 550 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 DDX3XO00571 662 aaKnown RBP eCLIP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 LZTS3O60299 673 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 SIN3BO75182 1162 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 GZMAP12544 262 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 SKILP12757 684 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 GPD1P21695 349 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 RRM1P23921 792 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 ACP1P24666 158 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 STK19P49842 368 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 ST8SIA6P61647 398 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 RPL7AP62424 266 aaKnown RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 TPM4P67936 248 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 OGDHQ02218 1023 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 NRG1Q02297 640 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 ZNF177Q13360 481 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 CLCA4Q14CN2 919 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 ASIC2Q16515 512 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 TBR1Q16650 682 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 KCNT1Q5JUK3 1230 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 ACBD5Q5T8D3 534 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FAM72AQ5TYM5 149 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 MANEALQ5VSG8 457 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 RNF219Q5W0B1 726 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 HGSNATQ68CP4 663 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FAM72DQ6L9T8 149 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 USP53Q70EK8 1073 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FAM72BQ86X60 149 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 CACUL1Q86Y37 369 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 MMP21Q8N119 569 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 CCDC185Q8N715 623 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 SAP25Q8TEE9 199 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FRS2Q8WU20 508 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FAM172AQ8WUF8 416 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FAM129BQ96TA1 746 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 PSMB7Q99436 277 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 NUP58Q9BVL2 599 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 KRTAP4-8Q9BYQ9 185 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 GRIP2Q9C0E4 1043 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 OSBPL2Q9H1P3 480 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 RSPH9Q9H1X1 276 aaPredicted RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 FBRSQ9HAH7 460 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 TIMMDC1Q9NPL8 285 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 MPP6Q9NZW5 540 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 IFNKQ9P0W0 207 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 PPARGC1AQ9UBK2 798 aaKnown RBP8.64□□□□□ -1.03
SSBP3-212ENST00000528930 PRDM4Q9UKN5 801 aa8.64□□□□□ -1.03
SSBP3-212ENST00000528930 CCDC168Q8NDH2 2452 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 A0A0D9SEW6 157 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 EDDM13A0A1B0GTR0 161 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 A0A1W2PNU3 283 aaPredicted RBP8.63□□□□□ -1.03
SSBP3-212ENST00000528930 TMCO5BA8MYB1 307 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 CCP110O43303 1012 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 SRGAP2O75044 1071 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 USP12O75317 370 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 CLDN1O95832 211 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 THBS1P07996 1170 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 ACADMP11310 421 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 VAV1P15498 845 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 CKMT2P17540 419 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 OXTRP30559 389 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 ACSL1P33121 698 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 SCTRP47872 440 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 ZNF143P52747 638 aaPredicted RBP8.63□□□□□ -1.03
SSBP3-212ENST00000528930 ZBTB16Q05516 673 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 SULT2A1Q06520 285 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 KLHL30Q0D2K2 578 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 MAMLD1Q13495 774 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 SHBQ15464 509 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 TEAD4Q15561 434 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 FHL5Q5TD97 284 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 PLEKHA7Q6IQ23 1121 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 DNAJC24Q6P3W2 148 aa8.63□□□□□ -1.03
SSBP3-212ENST00000528930 LRRC31Q6UY01 552 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms