RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 TIAM2Q8IVF5 1701 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 FMN2Q9NZ56 1722 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 LAMB1P07942 1786 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 CHD4Q14839 1912 aa5.87□□□□□ -1.47
CD44-225ENST00000527326 ZNFX1Q9P2E3 1918 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 CCDC88AQ3V6T2 1871 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 SCN4AP35499 1836 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 KIF1AQ12756 1690 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LRP5O75197 1615 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ATRNO75882 1429 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 HEG1Q9ULI3 1381 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 NRCAMQ92823 1304 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CYP3A7-CYP3A51PA0A087WV96 503 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 A0A0G2JMP0 313 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LINC00862A6NCI5 91 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LEUTXA8MZ59 168 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TMX2-CTNND1H3BSU7 103 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CTDSP2O14595 271 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 DNALI1O14645 258 aaPredicted RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 FSCN2O14926 492 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ZBTB5O15062 677 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TP73O15350 636 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 PHGDHO43175 533 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 HTRA2O43464 458 aaPredicted RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 SSX5O60225 188 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LPXNO60711 386 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 MMP20O60882 483 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 UPK1BO75841 260 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ALDH1A2O94788 518 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 SEMA3DO95025 777 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 VNN1O95497 513 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CSF1RP07333 972 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ASNSP08243 561 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CYP2D6P10635 497 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 RALBP11234 206 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 YBX3P16989 372 aaKnown RBP eCLIP5.86□□□□□ -1.47
CD44-225ENST00000527326 SYN1P17600 705 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CD53P19397 219 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CYP3A7P24462 503 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 IVDP26440 423 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 MAOBP27338 520 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CDH5P33151 784 aaPredicted RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 GUCY1A2P33402 732 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 GRIA3P42263 894 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 MCAMP43121 646 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 HOXA1P49639 335 aaPredicted RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 HLCSP50747 726 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 RACK1P63244 317 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 IFITM3Q01628 133 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ARID5AQ03989 594 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TFCP2Q12800 502 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 SIX1Q15475 284 aaPredicted RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 VPS72Q15906 364 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 PTPROQ16827 1216 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 DDR2Q16832 855 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 UGP2Q16851 508 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 MDH1BQ5I0G3 518 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 RALGPS1Q5JS13 557 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ARTNQ5T4W7 220 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 IZUMO3Q5VZ72 239 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TATDN1Q6P1N9 297 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ZNF773Q6PK81 442 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 IGF2-ASQ6U949 168 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ABRAXAS1Q6UWZ7 409 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 UNC5DQ6UXZ4 953 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ATG14Q6ZNE5 492 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 KCTD8Q6ZWB6 473 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 BRINP3Q76B58 766 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 STX12Q86Y82 276 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LIX1LQ8IVB5 337 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 NUDCD3Q8IVD9 361 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CCDC103Q8IW40 242 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 CPNE9Q8IYJ1 553 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TAGAPQ8N103 731 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LRRC71Q8N4P6 559 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 FAM47BQ8NA70 645 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 FANCBQ8NB91 859 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 OR6Q1Q8NGQ2 317 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 OR8K5Q8NH50 307 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 OR8K3Q8NH51 312 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 PHF10Q8WUB8 498 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 PDCD6IPQ8WUM4 868 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 SEPT8Q92599 483 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 EDEM1Q92611 657 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 ALG3Q92685 438 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TFAP2CQ92754 450 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 MARC2Q969Z3 335 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 PLD4Q96BZ4 506 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 HDAC11Q96DB2 347 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 LRRC39Q96DD0 335 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 FAM89AQ96GI7 184 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 AHCYL2Q96HN2 611 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 ARL5BQ96KC2 179 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 DACH2Q96NX9 599 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 NSUN5Q96P11 429 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 NAP1L4Q99733 375 aaKnown RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 GDF15Q99988 308 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 DHRS4Q9BTZ2 278 aa5.86□□□□□ -1.47
CD44-225ENST00000527326 TRAF4Q9BUZ4 470 aaPredicted RBP5.86□□□□□ -1.47
CD44-225ENST00000527326 CDK19Q9BWU1 502 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms