RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 NOTOA8MTQ0 251 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 EEF2KO00418 725 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 ALDH1A2O94788 518 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 CALB1P05937 261 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 MMP8P22894 467 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 MIPP30301 263 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 GSTT1P30711 240 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PTPN5P54829 565 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 IFFO1Q0D2I5 559 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 TRIM61Q5EBN2 209 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 FYB2Q5VWT5 728 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 PM20D1Q6GTS8 502 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 ZC3H14Q6PJT7 736 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 HTR3DQ70Z44 454 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 ZC3H18Q86VM9 953 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 HJURPQ8NCD3 748 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 CHST14Q8NCH0 376 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF564Q8TBZ8 553 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 SETD7Q8WTS6 366 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 NAT14Q8WUY8 206 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 DNASE1L2Q92874 299 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 KCNN1Q92952 543 aa8□□□□□ -1.13
LIMCH1-219ENST00000514096 EVLQ9UI08 416 aaPredicted RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 INTS6Q9UL03 887 aaKnown RBP8□□□□□ -1.13
LIMCH1-219ENST00000514096 CACNA1AO00555 2505 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 FASNP49327 2511 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CTAGE15A4D2H0 777 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ARNTLO00327 626 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 FOXD2O60548 495 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 H2AFZP0C0S5 128 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 PIRTP0C851 137 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CTAGE8P0CG41 777 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 KRT10P13645 584 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 PRKACAP17612 351 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CSE1LP55060 971 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF211Q13398 564 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 PITRM1Q5JRX3 1037 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 RAB41Q5JT25 222 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CRTC1Q6UUV9 634 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ARHGAP36Q6ZRI8 547 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 H2AFVQ71UI9 128 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CTAGE6Q86UF2 777 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CTAGE4Q8IX94 777 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 UBR7Q8N806 425 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CDC26Q8NHZ8 85 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CHRDQ9H2X0 955 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 HPCAL4Q9UM19 191 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SLCO1B1Q9Y6L6 691 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SHISA7A6NL88 538 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 KCNK1O00180 336 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 KRT75O95678 551 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 IRX4P78413 519 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ECT2LQ008S8 904 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF33AQ06730 810 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 FAPQ12884 760 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 POLD3Q15054 466 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 PLEKHG6Q3KR16 790 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF554Q86TJ5 538 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 TTC7BQ86TV6 843 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SMIM14Q96QK8 99 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 NAA15Q9BXJ9 866 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SP110Q9HB58 689 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SERGEFQ9UGK8 458 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 TLR6Q9Y2C9 796 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 DSPP15924 2871 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 WDR91A4D1P6 747 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 MAGEB3O15480 346 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ATG13O75143 517 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 STAMBPO95630 424 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 FTCDO95954 541 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ZDHHC11BP0C7U3 371 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 MYF5P13349 255 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ADARP55265 1226 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 CLDN6P56747 220 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 GUCY1A3Q02108 690 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 MAMLD1Q13495 774 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC25A52Q3SY17 297 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ARSIQ5FYB1 569 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ANKRD49Q8WVL7 239 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 KCTD13Q8WZ19 329 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SNRNP25Q9BV90 132 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ABHD10Q9NUJ1 306 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 TMEM74BQ9NUR3 256 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 PARVAQ9NVD7 372 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 PIH1D1Q9NWS0 290 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 HSFX1Q9UBD0 423 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 SLC25A13Q9UJS0 675 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 COQ6Q9Y2Z9 468 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 THADAQ6YHU6 1953 aa7.99□□□□□ -1.13
LIMCH1-219ENST00000514096 ATRXP46100 2492 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 SPTAN1Q13813 2472 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 COL6A6A6NMZ7 2263 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 CFAP69A5D8W1 941 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 PABPN1LA6NDY0 278 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RAMP2O60895 175 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 RNASEH1O60930 286 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 PAK4O96013 591 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 SERPING1P05155 500 aa7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 DLDP09622 509 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-219ENST00000514096 GABRG2P18507 467 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms