RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TTC24A2A3L6 582 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 A8MT66 165 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 TRMUO75648 421 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SEC24DO94855 1032 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CDK4P11802 303 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CDH2P19022 906 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 BDNFP23560 247 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 GRIA3P42263 894 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 KCNC1P48547 511 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CXCR3P49682 368 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 GALK1P51570 392 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 MAXP61244 160 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 LRP8Q14114 963 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 DUSP28Q4G0W2 176 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 ABTB1Q969K4 478 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC45A3Q96JT2 553 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 KATNBL1Q9H079 304 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 BRD8Q9H0E9 1235 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 MPP6Q9NZW5 540 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 EGFL7Q9UHF1 273 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 TMCO1Q9UM00 188 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PHF24Q9UPV7 400 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC22A2O15244 555 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 MSI1O43347 362 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 NPHS1O60500 1241 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC4A1P02730 911 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SNRPB2P08579 225 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 GJA5P36382 358 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 ETFBP38117 255 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SH3BGRP55822 239 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 ITKQ08881 620 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 APOFQ13790 326 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 RFTN1Q14699 578 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 GEN1Q17RS7 908 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 MAP7D1Q3KQU3 841 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 TMEM259Q4ZIN3 620 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CHERPQ8IWX8 916 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 NUP93Q8N1F7 819 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SCAMP5Q8TAC9 235 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 LPPQ93052 612 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 LRCH3Q96II8 777 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 MAELQ96JY0 434 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PAAF1Q9BRP4 392 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC2A11Q9BYW1 496 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CROTQ9UKG9 612 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 TCAF1Q9Y4C2 921 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PTGDR2Q9Y5Y4 395 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 LTBP3Q9NS15 1303 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CASTOR2A6NHX0 329 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PDLIM1O00151 329 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PPP6CO00743 305 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 GABRDO14764 452 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 F9P00740 461 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 LRPAP1P30533 357 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 HSPA13P48723 471 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CLCNKBP51801 687 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 INTS6LQ5JSJ4 861 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 LIMS2Q7Z4I7 341 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 DQX1Q8TE96 717 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SH3RF2Q8TEC5 729 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 ALG9Q9H6U8 611 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 CEPT1Q9Y6K0 416 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 NRP2O60462 931 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 ANXA9O76027 345 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 IPO13O94829 963 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 HLA-DQB2P05538 268 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 HK2P52789 917 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PPIL2Q13356 520 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 DCLRE1AQ6PJP8 1040 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PELI3Q8N2H9 469 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 FAM47BQ8NA70 645 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 C3orf58Q8NDZ4 430 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 RPL10LQ96L21 214 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 SPAG4Q9NPE6 437 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 IGSF5Q9NSI5 407 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 DSEQ9UL01 958 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 TRAF6Q9Y4K3 522 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 RAD54BQ9Y620 910 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 PAPPA2Q9BXP8 1791 aa9.32□□□□□ -0.92
LIMCH1-215ENST00000512632 OR51F1A6NGY5 319 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 HSPA1AP0DMV8 641 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 HSPA1BP0DMV9 641 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 PLOD1Q02809 727 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 KIF19Q2TAC6 998 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 FBXO48Q5FWF7 155 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 CHSY3Q70JA7 882 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 TMEM126BQ8IUX1 230 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 ARHGAP12Q8IWW6 846 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 HASPINQ8TF76 798 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 DPF3Q92784 378 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 C3orf30Q96M34 536 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 UTP6Q9NYH9 597 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 CRYL1Q9Y2S2 319 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 H6PDO95479 791 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 WNT3AP56704 352 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 HPCAP84074 193 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 TMED1Q13445 227 aa9.31□□□□□ -0.92
LIMCH1-215ENST00000512632 HMBOX1Q6NT76 420 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms