RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TSC22D4Q9Y3Q8 395 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 CPQQ9Y646 472 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 OXSR1O95747 527 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 IL10P22301 178 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 DNAJB13P59910 316 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 ATP6V0D1P61421 351 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 PSMD5Q16401 504 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 TMTC4Q5T4D3 741 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 DEPDC1Q5TB30 811 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 KCTD11Q693B1 232 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 TXNDC5Q8NBS9 432 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 CLEC4CQ8WTT0 213 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 OMDQ99983 421 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 MTG1Q9BT17 334 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 TSPYL2Q9H2G4 693 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 SNX25Q9H3E2 840 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 PIM2Q9P1W9 311 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 ACOT9Q9Y305 439 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 RAD54BQ9Y620 910 aa17.23■□□□□ 0.35
SQSTM1-211ENST00000506690 HNRNPLP14866 589 aaKnown RBP eCLIP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 STAT5BP51692 787 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SEPT6Q14141 434 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 INPP5AQ14642 412 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 MAP7D1Q3KQU3 841 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 CHST15Q7LFX5 561 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 TRIM50Q86XT4 487 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 TTC39CQ8N584 583 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 DHRSXQ8N5I4 330 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 NXNL1Q96CM4 212 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 ZNF641Q96N77 438 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 TRIM15Q9C019 465 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 NSMCE4AQ9NXX6 385 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 ABCD2Q9UBJ2 740 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 PSME2Q9UL46 239 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 FZD10Q9ULW2 581 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 MTF2Q9Y483 593 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 KCNK1O00180 336 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 NME4O00746 187 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 PSMA4P25789 261 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SOWAHAQ2M3V2 549 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 CCNYL2Q5T2Q4 361 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 LCN8Q6JVE9 175 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SLC2A7Q6PXP3 512 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SPPL2CQ8IUH8 684 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SNX31Q8N9S9 440 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 OR9I1Q8NGQ6 314 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 RAB2BQ8WUD1 216 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 STARD8Q92502 1023 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 MYRFLQ96LU7 910 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 ALPK1Q96QP1 1244 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 PSD2Q9BQI7 771 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 MRPL46Q9H2W6 279 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 TBC1D13Q9NVG8 400 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SMPD3Q9NY59 655 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 PKD2L2Q9NZM6 624 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 KLHL8Q9P2G9 620 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 IFT80Q9P2H3 777 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 FZD1Q9UP38 647 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 TNFSF13BQ9Y275 285 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 SRCAPQ6ZRS2 3230 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 COL4A5P29400 1685 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 LCTP09848 1927 aa17.22■□□□□ 0.35
SQSTM1-211ENST00000506690 EI24O14681 340 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 PGK1P00558 417 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 MBL2P11226 248 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 CYP2C9P11712 490 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 PTPN3P26045 913 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 YAP1P46937 504 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 IREB2P48200 963 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 SNX16P57768 344 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 TUBA3CQ13748 450 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 ZNF773Q6PK81 442 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 FRA10AC1Q70Z53 315 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 SLC41A1Q8IVJ1 513 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 ADGRG5Q8IZF4 528 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 LRRC71Q8N4P6 559 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 C17orf50Q8WW18 174 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 ZNF347Q96SE7 839 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 RHOBTB2Q9BYZ6 727 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 POMKQ9H5K3 350 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 MRM3Q9HC36 420 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 TNFRSF12AQ9NP84 129 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 FIS1Q9Y3D6 152 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 RLFQ13129 1914 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 TPST1O60507 370 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 STAG3L1P0CL83 205 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 NMBRP28336 390 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 NPY2RP49146 381 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 MAPK10P53779 464 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 ZNF460Q14592 562 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 PAFAH1B3Q15102 231 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 STRADAQ7RTN6 431 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 FUNDC1Q8IVP5 155 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 TP53INP2Q8IXH6 220 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 SNX19Q92543 992 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 CCDC138Q96M89 665 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 GLT1D1Q96MS3 346 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 ZNF214Q9UL59 606 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 TMEM98Q9Y2Y6 226 aa17.21■□□□□ 0.35
SQSTM1-211ENST00000506690 TTC24A2A3L6 582 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms