RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 GNGT2O14610 69 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 HOXD12P35452 270 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TLE2Q04725 743 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 POLD3Q15054 466 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 UBXN11Q5T124 520 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NAPEPLDQ6IQ20 393 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TRAF7Q6Q0C0 670 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KCNMB4Q86W47 210 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMEM86AQ8N2M4 240 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PQLC1Q8N2U9 271 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ASIC4Q96FT7 647 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC4A5Q9BY07 1137 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SEMA6AQ9H2E6 1030 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC7A8Q9UHI5 535 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ERI2A8K979 691 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 E5RI56 91 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PIRO00625 290 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 DCXO43602 365 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SPRP35270 261 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ACTR3P61158 418 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 COL9A2Q14055 689 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CYP1B1Q16678 543 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MORN1Q5T089 497 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RSBN1Q5VWQ0 802 aaPredicted RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PDPK2PQ6A1A2 396 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZDHHC17Q8IUH5 632 aa10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LIN28AQ9H9Z2 209 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NRXN2Q9P2S2 1712 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PFKMP08237 780 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CSH1P0DML2 217 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CSH2P0DML3 217 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF24P17028 368 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KLRC2P26717 231 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CTGFP29279 349 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TUFMP49411 452 aaKnown RBP10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GPX6P59796 221 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DAB2P98082 770 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KRT72Q14CN4 511 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GPR107Q5VW38 600 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DDIASQ8IXT1 998 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LPCAT1Q8NF37 534 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FNIP1Q8TF40 1166 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF296Q8WUU4 475 aaPredicted RBP10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SERAC1Q96JX3 654 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CDRT15Q96T59 188 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CCSER2Q9H7U1 834 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LRRC40Q9H9A6 602 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ATP13A1Q9HD20 1204 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GIN1Q9NXP7 522 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GJD2Q9UKL4 321 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 A0A096LPK6 155 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQF3 1178 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRIM64CA6NLI5 447 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SLC10A3P09131 477 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 THRAP10827 490 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CHRM3P20309 590 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FUT4P22083 530 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 BST1Q10588 318 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NDUFA5Q16718 116 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C1QTNF12Q5T7M4 302 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KLHL35Q6PF15 583 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DCLRE1AQ6PJP8 1040 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DCBLD1Q8N8Z6 715 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 APOPT1Q96IL0 206 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 BTBD9Q96Q07 612 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GPR62Q9BZJ7 368 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 GRID1Q9ULK0 1009 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CAB39Q9Y376 341 aaPredicted RBP10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQS6 177 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ASNA1O43681 348 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FKTNO75072 461 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PAMP19021 973 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KCNQ1P51787 676 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PKNOX1P55347 436 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 RPS24P62847 133 aaKnown RBP10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 LRRC73Q5JTD7 316 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 C6orf52Q5T4I8 152 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KBTBD2Q8IY47 623 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 OR7D4Q8NG98 312 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 DIS3LQ8TF46 1054 aaKnown RBP10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CNDP1Q96KN2 507 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ACSS3Q9H6R3 686 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ABCC13Q9NSE7 274 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 TRPM5Q9NZQ8 1165 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NENFQ9UMX5 172 aa10.83□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MOXD2PA6NHM9 499 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PRPF4O43172 522 aaKnown RBP eCLIP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 URODP06132 367 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 CAPN1P07384 714 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PORP16435 677 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 FGFR3P22607 806 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ENTPD1P49961 510 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 MGAT5Q09328 741 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 INCA1Q0VD86 236 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 ZNF177Q13360 481 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 PTPRCAPQ14761 206 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 KIF19Q2TAC6 998 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 SGO1Q5FBB7 561 aa10.82□□□□□ -0.68
MSH5-SAPCD1-207ENST00000493662 NCBP2-AS2Q69YL0 99 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms