RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 MPP6Q9NZW5 540 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 CWC15Q9P013 229 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 COX16Q9P0S2 106 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 CTTNBP2NLQ9P2B4 639 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ANKMY1Q9P2S6 941 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 SUN2Q9UH99 717 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 PLA2G4CQ9UP65 541 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 AP4E1Q9UPM8 1137 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ERVW-1Q9UQF0 538 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 HS3ST2Q9Y278 367 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 SNX10Q9Y5X0 201 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ALG6Q9Y672 507 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 STON1Q9Y6Q2 735 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 NAV3Q8IVL0 2385 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 CACNA1DQ01668 2161 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 A0A0D9SEW6 157 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 FAM170AA1A519 330 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 FAM221BA6H8Z2 402 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 C3orf70A6NLC5 250 aaPredicted RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 WASH3PC4AMC7 463 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 DCLK1O15075 740 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 SRGAP2O75044 1071 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 ZNF821O75541 412 aaPredicted RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 MOCS3O95396 460 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 KLF8O95600 359 aaPredicted RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 KRT7P08729 469 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 POLR2EP19388 210 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 OR1E1P30953 314 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 CSKP41240 450 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 IL12RB1P42701 662 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 VAV2P52735 878 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 NDST2P52849 883 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 TAS2R40P59535 323 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 GNA12Q03113 381 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 ZBTB16Q05516 673 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 KDSRQ06136 332 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 SERINC3Q13530 473 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 CDH18Q13634 790 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 HADHQ16836 314 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 HNRNPA1L2Q32P51 320 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 INO80DQ53TQ3 878 aaPredicted RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 C2orf27AQ580R0 203 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 C9orf64Q5T6V5 341 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 C11orf63Q6NUN7 778 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 SCYL2Q6P3W7 929 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 RFX8Q6ZV50 586 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 LONP2Q86WA8 852 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 LRRC49Q8IUZ0 686 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 CCDC117Q8IWD4 279 aaPredicted RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 CARNMT1Q8N4J0 409 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 ALLCQ8N6M5 410 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 LRRC57Q8N9N7 239 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 PTPRN2Q92932 1015 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 ARHGEF2Q92974 986 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 FATE1Q969F0 183 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 ISG20Q96AZ6 181 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 ZC3H10Q96K80 434 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 BTBD6Q96KE9 485 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 TRIM4Q9C037 500 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 SEMA4CQ9C0C4 833 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 CATSPERBQ9H7T0 1116 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 PRSS16Q9NQE7 514 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 ITM2CQ9NQX7 267 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 PCSK1NQ9UHG2 260 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 SLCO3A1Q9UIG8 710 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 CYP8B1Q9UNU6 501 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 MYO18AQ92614 2054 aaKnown RBP6.87□□□□□ -1.31
VPS52-219ENST00000493379 KIAA1549LQ6ZVL6 1849 aa6.87□□□□□ -1.31
VPS52-219ENST00000493379 USP9YO00507 2555 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 CHD5Q8TDI0 1954 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 NF1P21359 2839 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ZSCAN5CA6NGD5 496 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 H3BM21 787 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 MCF2LO15068 1137 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ALOX15BO15296 676 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 KDELR3O43731 214 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 BUB1BO60566 1050 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 EPN2O95208 641 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 APBB3O95704 486 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 GP1BBP13224 206 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ERCC2P18074 760 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 GABRG2P18507 467 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 CSRP1P21291 193 aaKnown RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 EPHA1P21709 976 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ITPKBP27987 946 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 EPHB2P29323 1055 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 PEX5P50542 639 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 COPAP53621 1224 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SIM1P81133 766 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 CCZ1BP86790 482 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 CCZ1P86791 482 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 PAFAH1B3Q15102 231 aaKnown RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 UAP1L1Q3KQV9 507 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 PARP15Q460N3 678 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 ATP13A4Q4VNC1 1196 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 SPDYCQ5MJ68 293 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 DAB2IPQ5VWQ8 1189 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 RNF219Q5W0B1 726 aaPredicted RBP6.86□□□□□ -1.31
VPS52-219ENST00000493379 SDE2Q6IQ49 451 aa6.86□□□□□ -1.31
VPS52-219ENST00000493379 BNC2Q6ZN30 1099 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms