RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 MACROD1Q9BQ69 325 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 NUAK2Q9H093 628 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 MMADHCQ9H3L0 296 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TRPV4Q9HBA0 871 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ANKFY1Q9P2R3 1169 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 DKK2Q9UBU2 259 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 TUBE1Q9UJT0 475 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 ST3GAL5Q9UNP4 418 aa4.82□□□□□ -1.64
VPS13A-212ENST00000493341 LOC100509620A0A075B734 347 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 CBY3A6NI87 242 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 MSI1O43347 362 aaKnown RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 HCRTR2O43614 444 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 MT-CYBP00156 380 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 MT-ND3P03897 115 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 FYNP06241 537 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 AKR1A1P14550 325 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 MMP9P14780 707 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF182P17025 639 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 ATF7P17544 494 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 IDUAP35475 653 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 MATR3P43243 847 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 CCR10P46092 362 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 POLGP54098 1239 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 YWHAHQ04917 246 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 WASHC5Q12768 1159 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 GRIK3Q13003 919 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 GALNT3Q14435 633 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 TIGD2Q4W5G0 525 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 FBLN7Q53RD9 439 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 COLEC12Q5KU26 742 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 PMS2CLQ68D20 193 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 CFAP77Q6ZQR2 320 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 WDR5BQ86VZ2 330 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 RFX6Q8HWS3 928 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 TERB1Q8NA31 727 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 SPC24Q8NBT2 197 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 CCDC47Q96A33 483 aaKnown RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 THAP7Q9BT49 309 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 FRMD8Q9BZ67 464 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-212ENST00000493341 DNAI2Q9GZS0 605 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 PLAGL1Q9UM63 463 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 KNSTRNQ9Y448 316 aa4.81□□□□□ -1.64
VPS13A-212ENST00000493341 ADAMTS20P59510 1910 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 LOC102723996A0A087X1L8 192 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 A0A0A0MQY5 61 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CXorf65A6NEN9 183 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 TMEM200CA6NKL6 621 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 RTCAO00442 366 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 FMO6PO60774 539 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 GCATO75600 419 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 STMN1P16949 149 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SUOXP51687 545 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 BPIFB3P59826 476 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 PKN2Q16513 984 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 MPP7Q5T2T1 576 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CADM3Q8N126 398 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 GRK7Q8WTQ7 553 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SLC25A43Q8WUT9 341 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 FAR1Q8WVX9 515 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 KCNE4Q8WWG9 221 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 EDAQ92838 391 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 ATOH1Q92858 354 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 ZC3HAV1LQ96H79 300 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CCDC43Q96MW1 224 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 TEFMQ96QE5 360 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SPAG5Q96R06 1193 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SIN3AQ96ST3 1273 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 TKTL2Q9H0I9 626 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 BPIFA1Q9NP55 256 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 FBXO40Q9UH90 709 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SLC8A2Q9UPR5 921 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 LSM4Q9Y4Z0 139 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 ABCC9O60706 1549 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 UTYO14607 1347 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 EMSYQ7Z589 1322 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 LINC00473A8K010 186 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 PRPF4O43172 522 aaKnown RBP eCLIP4.8□□□□□ -1.645e-6■□□□□ 8.5
VPS13A-212ENST00000493341 HTATSF1O43719 755 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 NFATC1O95644 943 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 THEGLP0DJG4 465 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 ANXA7P20073 488 aaKnown RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 KLRC2P26717 231 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CHRNA5P30532 468 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 TXKP42681 527 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 NPY4RP50391 375 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CCR3P51677 355 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 KCNC3Q14003 757 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 PFKFB3Q16875 520 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 AWAT1Q58HT5 328 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 C6orf163Q5TEZ5 329 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 ZNF474Q6S9Z5 364 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-212ENST00000493341 LCTLQ6UWM7 567 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 TFAP2DQ7Z6R9 452 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 MMP21Q8N119 569 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 OR52N4Q8NGI2 321 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 TEKT4Q8WW24 435 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 CCDC17Q96LX7 622 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 C1QTNF5Q9BXJ0 243 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 HIPK3Q9H422 1215 aa4.8□□□□□ -1.64
VPS13A-212ENST00000493341 SLC28A3Q9HAS3 691 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms