RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 GALNT8Q9NY28 637 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 THEGQ9P2T0 379 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 PSMC3IPQ9P2W1 217 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 TRIM10Q9UDY6 481 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ARMCX3Q9UH62 379 aaPredicted RBP4.27□□□□□ -1.73
BRCA1-220ENST00000492859 KCND3Q9UK17 655 aa4.27□□□□□ -1.73
BRCA1-220ENST00000492859 ELP1O95163 1332 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 H0YJX3 145 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 FCHO1O14526 889 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 FANCGO15287 622 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 EFSO43281 561 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 RECQL5O94762 991 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ACTL6BO94805 426 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 RASAL1O95294 804 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 LCA5LO95447 670 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SERPINA3P01011 423 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ANXA1P04083 346 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 KRT8P05787 483 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 LINGO3P0C6S8 592 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 OR8G3PP0DMU2 310 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 UROSP10746 265 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PKMP14618 531 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 BRAFP15056 766 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ITGB6P18564 788 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 M6PRP20645 277 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 GPTP24298 496 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CCND2P30279 289 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 LCN1P31025 176 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SFNP31947 248 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 GRK3P35626 688 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ATP5C1P36542 298 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 IL12RB1P42701 662 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PAFAH1B1P43034 410 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CD97P48960 835 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SLC11A2P49281 568 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CASP4P49662 377 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 KHKP50053 298 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 COPB1P53618 953 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CLDN8P56748 225 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 NLRP11P59045 1033 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SELENOVP59797 346 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 STX1BP61266 288 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 HNRNPKP61978 463 aaKnown RBP eCLIP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 GPLD1P80108 840 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PDE1BQ01064 536 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PLOD1Q02809 727 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 RPL6Q02878 288 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 MGAT5Q09328 741 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ABRQ12979 859 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SCGB2A2Q13296 93 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SNTB2Q13425 540 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DRP2Q13474 957 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 TUBB3Q13509 450 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PCLAFQ15004 111 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 EPHA7Q15375 998 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 HYAL4Q2M3T9 481 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 NADK2Q4G0N4 442 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DNAL1Q4LDG9 190 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CEP85LQ5SZL2 805 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 THEMIS2Q5TEJ8 643 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CLEC6AQ6EIG7 209 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 INO80CQ6PI98 192 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SARM1Q6SZW1 724 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 MOXD1Q6UVY6 613 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 UTS2BQ765I0 119 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 TRILQ7L0X0 811 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 TMPRSS9Q7Z410 1059 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ANKS1BQ7Z6G8 1248 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SYVN1Q86TM6 617 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ZC3H18Q86VM9 953 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CLVS1Q8IUQ0 354 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CCDC117Q8IWD4 279 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CHERPQ8IWX8 916 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SIRT2Q8IXJ6 389 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SP8Q8IXZ3 490 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DSELQ8IZU8 1212 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ANKRD13CQ8N6S4 541 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 MB21D1Q8N884 522 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ZNF781Q8N8C0 355 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 SCAIQ8N9R8 606 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 FNDC5Q8NAU1 212 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 RBM15BQ8NDT2 890 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 C17orf47Q8NEP4 570 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 OR2T3Q8NH03 318 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 OR52J3Q8NH60 311 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CD300LFQ8TDQ1 290 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DUSP19Q8WTR2 217 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DVL3Q92997 716 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 OPALINQ96PE5 141 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 INTS14Q96SY0 518 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PTPN18Q99952 460 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 EFHD1Q9BUP0 239 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 CALN1Q9BXU9 219 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PARD6GQ9BYG4 376 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 POTEKPQ9BYX7 375 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ZDHHC5Q9C0B5 715 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 QRSL1Q9H0R6 528 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 GBA3Q9H227 469 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 LRMDAQ9H2I8 198 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms