RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 FITM2Q8N6M3 262 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 TLCD1Q96CP7 247 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CCDC3Q9BQI4 270 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 DHX33Q9H6R0 707 aaKnown RBP16.55■□□□□ 0.24
COL7A1-210ENST00000487017 IPPQ9Y573 584 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PCDH8O95206 1070 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 SLURP2P0DP57 97 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 IDH2P48735 452 aaKnown RBP16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PRKG2Q13237 762 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 EML3Q32P44 896 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CDC73Q6P1J9 531 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ADGRD1Q6QNK2 874 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 UBASH3BQ8TF42 649 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 SEMA3CQ99985 751 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 LGALS13Q9UHV8 139 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PSMD13Q9UNM6 376 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 LOC100506127A0A0U1RQW1 187 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 ULK1O75385 1050 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 RPN2P04844 631 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 CCNA2P20248 432 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 MAPK9P45984 424 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 ATP6V0D1P61421 351 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 RD3Q7Z3Z2 195 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 CDYL2Q8N8U2 506 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 CPT1BQ92523 772 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 NKD2Q969F2 451 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 HSD3B7Q9H2F3 369 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 SPG21Q9NZD8 308 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 DMTF1Q9Y222 760 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 TBC1D30Q9Y2I9 924 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 PTCH2Q9Y6C5 1203 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 NID2Q14112 1375 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 TNNI3P19429 210 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 RPL38P63173 70 aaKnown RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 SPIRE1Q08AE8 756 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 PTPRNQ16849 979 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 SLC5A9Q2M3M2 681 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 NEK10Q6ZWH5 1172 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 CDCA5Q96FF9 252 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 DUSP16Q9BY84 665 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 RHOJQ9H4E5 214 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 KLHL1Q9NR64 748 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 N6AMT1Q9Y5N5 214 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 DDNO94850 711 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 BMP10O95393 424 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 ARHGAP36Q6ZRI8 547 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 MRPL45Q9BRJ2 306 aaKnown RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 PCDHB12Q9Y5F1 795 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 TULP2O00295 520 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 TM7SF2O76062 418 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 CST1P01037 141 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 CATP04040 527 aaKnown RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 SMIM10L2AP0DMW4 78 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 SMIM10L2BP0DMW5 78 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 TPP2P29144 1249 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 POLD2P49005 469 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 DPYSQ14117 519 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 SLC25A52Q3SY17 297 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 OR52K2Q8NGK3 314 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 LENG1Q96BZ8 264 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-210ENST00000487017 NPAS2Q99743 824 aa16.54■□□□□ 0.24
COL7A1-210ENST00000487017 ADCY6O43306 1168 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 LINC00032P0C843 101 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 ABL2P42684 1182 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 BEX3Q00994 111 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 KLF10Q13118 480 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 KLHL17Q6TDP4 642 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 MACC1Q6ZN28 852 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 SH3BP5LQ7L8J4 393 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 COMMD2Q86X83 199 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 PROSER1Q86XN7 944 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 MTFR1LQ9H019 292 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 FANCEQ9HB96 536 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 DNAJC28Q9NX36 388 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 EHD3Q9NZN3 535 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 ATP6AP2A0A1C7CYW4 349 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 BCLAF3A2AJT9 711 aaKnown RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 FFAR3O14843 346 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 GPR42O15529 346 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 ATP6AP2O75787 350 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 KLHL18O94889 574 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 C4BPAP04003 597 aaKnown RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 LPCAT4Q643R3 524 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 STRADAQ7RTN6 431 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 SOCS4Q8WXH5 440 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 BBIP1A8MTZ0 92 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 FAM155BO75949 473 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 OTCP00480 354 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 CDKN2BP42772 138 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 SLC7A2P52569 658 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 DMPKQ09013 629 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 DEFB128Q7Z7B8 93 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 KBTBD2Q8IY47 623 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 RBM15BQ8NDT2 890 aaKnown RBP16.53■□□□□ 0.24
COL7A1-210ENST00000487017 ZFP14Q9HCL3 533 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 VPS51Q9UID3 782 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 FAM47E-STBD1D6RA91 191 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 OFCC1Q8IZS5 231 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 GPC2Q8N158 579 aa16.53■□□□□ 0.24
COL7A1-210ENST00000487017 CACTIN-AS1Q8N1I8 211 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms