RNA–Protein interactions for RNA: ENST00000485567.1

FN1-222, Transcript of fibronectin 1, human

TSL 1 (best)

Gene FN1, Length 584 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FN1-222	ENST00000485567	TMEM68	Q96MH6	324 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	BBS4	Q96RK4	519 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	AGAP2	Q99490	1192 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	SCNM1	Q9BWG6	230 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	MAK16	Q9BXY0	300 aa	Known RBP	4.25	□□□□□ -1.73
FN1-222	ENST00000485567	PCED1A	Q9H1Q7	454 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	CDT1	Q9H211	546 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	IKZF4	Q9H2S9	585 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	PDZD7	Q9H5P4	517 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	KIF9	Q9HAQ2	790 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	RRP7BP	Q9NSQ0	103 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	ANKRD10	Q9NXR5	420 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	KLHL13	Q9P2N7	655 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	CTNNAL1	Q9UBT7	734 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	MORF4L1	Q9UBU8	362 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	RPS6KA6	Q9UK32	745 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	PCDHGB4	Q9UN71	923 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	AAR2	Q9Y312	384 aa	Known RBP	4.25	□□□□□ -1.73
FN1-222	ENST00000485567	SESN1	Q9Y6P5	492 aa		4.25	□□□□□ -1.73
FN1-222	ENST00000485567	COL11A2	P13942	1736 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SETD1B	Q9UPS6	1966 aa	Known RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SYNDIG1L	A6NDD5	238 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	MANSC4	A6NHS7	340 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	FAM90A8P	A6NJQ4	464 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	IFNL4	K9M1U5	179 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	P4HA2	O15460	535 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	HCRTR2	O43614	444 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	TLX3	O43711	291 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	CNOT3	O75175	753 aa	Known RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	NDUFS3	O75489	264 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	GJB3	O75712	270 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SLC25A12	O75746	678 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	BCAR3	O75815	825 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	ADRB2	P07550	413 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	FAM90A13P	P0C7W8	464 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	FAM90A24P	P0C7X0	464 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	EDN2	P20800	178 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	IL11	P20809	199 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	AGA	P20933	346 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	MCM3	P25205	808 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	EPHB2	P29323	1055 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	TNFSF8	P32971	234 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SHMT1	P34896	483 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	RFC1	P35251	1148 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	NNMT	P40261	264 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	BUD31	P41223	144 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SNX16	P57768	344 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	TGFB2	P61812	414 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	DRAP1	Q14919	205 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	TCTN1	Q2MV58	587 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SMTNL2	Q2TAL5	461 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	USP41	Q3LFD5	358 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	FAM133B	Q5BKY9	247 aa	Known RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	CEP78	Q5JTW2	689 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	KIAA1614	Q5VZ46	1190 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	DENND6A	Q8IWF6	608 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	RBFA	Q8N0V3	343 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	C17orf53	Q8N3J3	647 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	ZCCHC9	Q8N567	271 aa	Known RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	ARHGEF26	Q96DR7	871 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	PABPC5	Q96DU9	382 aa	Known RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SLITRK1	Q96PX8	696 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SIN3A	Q96ST3	1273 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	YME1L1	Q96TA2	773 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	SLF1	Q9BQI6	1058 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	MXRA8	Q9BRK3	442 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	MXD3	Q9BW11	206 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	TEX12	Q9BXU0	123 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	NUF2	Q9BZD4	464 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	B3GNT4	Q9C0J1	378 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	MVB12B	Q9H7P6	319 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	PDGFC	Q9NRA1	345 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	THSD1	Q9NS62	852 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	FLRT1	Q9NZU1	646 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	PLEKHB1	Q9UF11	243 aa	Predicted RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	NDRG3	Q9UGV2	375 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	RAP2C	Q9Y3L5	183 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	LSM4	Q9Y4Z0	139 aa	Known RBP	4.24	□□□□□ -1.73
FN1-222	ENST00000485567	COX11	Q9Y6N1	276 aa		4.24	□□□□□ -1.73
FN1-222	ENST00000485567	WDR33	Q9C0J8	1336 aa	Known RBP	4.23	□□□□□ -1.73
FN1-222	ENST00000485567		A0A0U1RQF3	1178 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567		A0A1W2PQ09	198 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	GAGE12J	A6NER3	117 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	WIPF3	A6NGB9	483 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	HSPB2	A8KAH6	182 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	BTBD18	B2RXH4	712 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	KLK8	O60259	260 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	TLR2	O60603	784 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	ERAL1	O75616	437 aa	Known RBP	4.23	□□□□□ -1.73
FN1-222	ENST00000485567	MTA2	O94776	668 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	CSPG5	O95196	566 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	KRT10	P13645	584 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	ZNF182	P17025	639 aa	Predicted RBP	4.23	□□□□□ -1.73
FN1-222	ENST00000485567	TMEM11	P17152	192 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	GABRB1	P18505	474 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	ITGAX	P20702	1163 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	GCH1	P30793	250 aa		4.23	□□□□□ -1.73
FN1-222	ENST00000485567	EIF2D	P41214	584 aa	Known RBP	4.23	□□□□□ -1.73
FN1-222	ENST00000485567	CXCR3	P49682	368 aa		4.23	□□□□□ -1.73

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